Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY28_RS23555 Genome accession   NZ_CP046814
Coordinates   3071882..3072400 (-) Length   172 a.a.
NCBI ID   WP_017820391.1    Uniprot ID   A0A2I3C9Z1
Organism   Vibrio alginolyticus strain 2010V-1102     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3066882..3077400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY28_RS23530 rimM 3066972..3067520 (-) 549 WP_005379964.1 ribosome maturation factor RimM -
  GPY28_RS23535 rpsP 3067550..3067798 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  GPY28_RS23540 ffh 3068008..3069390 (-) 1383 WP_005385423.1 signal recognition particle protein -
  GPY28_RS23545 - 3069615..3070409 (+) 795 WP_005379950.1 inner membrane protein YpjD -
  GPY28_RS23550 - 3070534..3071814 (+) 1281 WP_005379948.1 CNNM domain-containing protein -
  GPY28_RS23555 luxS 3071882..3072400 (-) 519 WP_017820391.1 S-ribosylhomocysteine lyase Regulator
  GPY28_RS23560 - 3072485..3073090 (-) 606 WP_005379943.1 hypothetical protein -
  GPY28_RS23565 gshA 3073114..3074682 (-) 1569 WP_158159770.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19074.83 Da        Isoelectric Point: 4.8443

>NTDB_id=408239 GPY28_RS23555 WP_017820391.1 3071882..3072400(-) (luxS) [Vibrio alginolyticus strain 2010V-1102]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLKEAQQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=408239 GPY28_RS23555 WP_017820391.1 3071882..3072400(-) (luxS) [Vibrio alginolyticus strain 2010V-1102]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGTATGAATGCACCCGCTGTACGAGTGGCGAAAACCATGCAGAC
CCCAAAAGGGGATACGATTACTGTTTTCGACTTACGCTTTACTGCGCCAAACAAAGACATTCTTTCTGAAAAAGGTATTC
ACACCCTAGAGCACCTTTATGCAGGCTTTATGCGTAATCACCTAAACGGTGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACAGGTTTTTACATGAGCCTGATTGGCACACCATCAGAGCAGCAAGTCGCAGATGCTTGGATTGCAGC
AATGGAAGATGTGCTGAAGGTAGAAAGTCAGAATAAGATCCCTGAACTTAACGAATACCAATGCGGCACGGCAGCAATGC
ACTCGTTAAAAGAAGCACAACAGATCGCAAAGAACATTTTGGATGCTGGTGTTTCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAGTCGATGTTAAAAGAGTTGCGCATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3C9Z1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment