Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GPY28_RS12080 Genome accession   NZ_CP046814
Coordinates   614103..615110 (-) Length   335 a.a.
NCBI ID   WP_005379543.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 2010V-1102     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 609103..620110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY28_RS12060 - 609597..610514 (-) 918 WP_047101879.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  GPY28_RS12065 hslU 611307..612638 (-) 1332 WP_047101881.1 HslU--HslV peptidase ATPase subunit -
  GPY28_RS12070 hslV 612662..613213 (-) 552 WP_158159544.1 ATP-dependent protease subunit HslV -
  GPY28_RS12075 ftsN 613329..613877 (-) 549 WP_017820300.1 cell division protein FtsN -
  GPY28_RS12080 cytR 614103..615110 (-) 1008 WP_005379543.1 DNA-binding transcriptional regulator CytR Regulator
  GPY28_RS12085 priA 615435..617639 (-) 2205 WP_158159545.1 primosomal protein N' -
  GPY28_RS12095 rpmE 617936..618157 (+) 222 WP_005379546.1 50S ribosomal protein L31 -
  GPY28_RS12100 rpsJ 618614..618925 (+) 312 WP_004410492.1 30S ribosomal protein S10 -
  GPY28_RS12105 rplC 618940..619569 (+) 630 WP_005379555.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36892.42 Da        Isoelectric Point: 6.2447

>NTDB_id=408219 GPY28_RS12080 WP_005379543.1 614103..615110(-) (cytR) [Vibrio alginolyticus strain 2010V-1102]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVHSGSRLLE
TNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=408219 GPY28_RS12080 WP_005379543.1 614103..615110(-) (cytR) [Vibrio alginolyticus strain 2010V-1102]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCGAGCCTTAATGAATCCAGAGAA
AGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTCCAAACTCATTAGCGCGTAACT
TACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTATTTTTCTGAAATTATTCGCGGT
ATTGAAGATGCAGCCATGGAACATGGCTATCTAGTCCTGCTGGGCGATAGCGGACAACAGAAGAAACGCGAAAGCTCTTT
CGTTAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTACCATTCGATGTCAGTAAGCCAG
AGCAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCAGAGCTCGAGCTTCCGACAGTACATATTGATAAC
CTGACCTCAGCATTTGAAGCGGTGAATTACCTGACTCAATTAGGTCATAAACGCATTGCTCAAATCTCTGGACCAGATAC
AGCAATATTGTGTCAGTTCCGCCAGCAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCATCAATAAAGATCCACAATATA
GTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAATTGCCAGAACCACCAACGGCT
ATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGGCTTACGAGTACCGCAAGATCT
CTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCACCATCTCTCAACCTCGCTATG
AGATTGGTCGACAAGCGATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCATTCAGGCTCGCGTCTGCTTGAA
ACTAATCTCGTCATTCGTGGAAGTGCAGCGCCACCACAGCGTCCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

98.204

99.701

0.979
  cytR Vibrio cholerae C6706

89.521

99.701

0.893

Multiple sequence alignment