Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GPY28_RS10850 Genome accession   NZ_CP046814
Coordinates   361609..363132 (+) Length   507 a.a.
NCBI ID   WP_053350674.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 2010V-1102     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 356609..368132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY28_RS10835 ilvE 358250..359188 (-) 939 WP_025768922.1 branched-chain-amino-acid transaminase -
  GPY28_RS10840 ilvM 359201..359485 (-) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  GPY28_RS10845 ilvG 359497..361143 (-) 1647 WP_053350673.1 acetolactate synthase 2 catalytic subunit -
  GPY28_RS10850 comM 361609..363132 (+) 1524 WP_053350674.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GPY28_RS10855 - 363191..364147 (-) 957 WP_158159521.1 DUF2860 domain-containing protein -
  GPY28_RS10860 - 364297..365175 (+) 879 WP_005379035.1 acyltransferase -
  GPY28_RS10865 - 365222..365824 (-) 603 WP_005379036.1 thiol:disulfide interchange protein DsbA/DsbL -
  GPY28_RS10870 - 365859..366845 (-) 987 WP_005379037.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54993.07 Da        Isoelectric Point: 9.0584

>NTDB_id=408214 GPY28_RS10850 WP_053350674.1 361609..363132(+) (comM) [Vibrio alginolyticus strain 2010V-1102]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGVLAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALEASKIQRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLFQTPKRKTIEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAIVKARVSHARNNMLNRSGKVNALLGSREIEAFCPLHKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGAEQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=408214 GPY28_RS10850 WP_053350674.1 361609..363132(+) (comM) [Vibrio alginolyticus strain 2010V-1102]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGCGTCGGGGTGCAAGCGCCATCGGTTAGTGTAGAAGTTCATATCAGCAA
CGGCATGCCAGGGTTTACCTTAGTAGGCTTGCCAGAGACAACGGTAAAAGAGTCCAAAGATCGCGTACGCAGTGCGATCA
TTAATTCTAACTTTCAATTTCCTGCTAAGCGGATCACCGTGAACTTGGCTCCGGCAGATCTACCCAAGGAGGGAGGACGT
TTTGATCTTCCTATAGCATTGGGGGTTTTGGCCGCTTCGGAGCAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
GGGTGAGTTAGCACTATCTGGTGGTCTGAGACCTGTAAAAGGTGTGCTGCCTGCTGCGCTGGAAGCCAGTAAGATTCAAC
GTCATTTGGTCGTCCCACATGTGAATGGCGATCAGGCGGCGCTGGTGGGGAAGGAACAACATAAATCGGCCCAATCATTA
CTGGAAGTATGTGCCGAGCTTTGTGGTCAACATCGACTGAATCTTTTTCAAACGCCTAAGCGAAAAACGATCGAAAAACA
TGGTCGAGACTTACAAGATATTATTGGCCAACAACAAGGTAAGCGAGCACTGGAGATTGCTGCCGCTGGAAACCACAACT
TACTTTTCCTTGGCCCGCCAGGTACTGGAAAAACGATGTTGGCTTCGCGTTTGTGTGACTTATTACCGGAAATGAGTGAC
GAAGAAGCAATGGAAACCGCTTCGGTGGCATCGTTGACTCAGAGTGAAATTAATGAGCATAACTGGAAGTCGCGTCCGTT
TCGTTCTCCGCACCATTCAAGTTCAATGGCGGCATTAGTCGGCGGTGGTTCGGTACCCAGACCAGGGGAGATCTCTTTAG
CCCACAACGGGTTATTGTTTCTCGATGAAATGCCCGAATTTGATCGTAAAGTTCTAGACTCGTTACGCGAACCGCTCGAA
TCTGGCGAGATCATTATCTCTCGAGCGCAAGGTAAAACACGCTTTCCGGCTCGCTTCCAATTAGTTGGAGCCTTGAACCC
AAGCCCGACAGGATATTACGAAGGCAATCAAGCGCGCACCAATCCACAAGCTATTTTGCGCTACCTTGGTCGATTATCTG
GACCACTGTTAGATCGCTTTGATATGTCTTTAGAAATCCCAGCTTTGCCCAAAGGGACATTAGCAGAAGGTGGTGATCGC
GGTGAGCCGACTGCTATCGTAAAAGCGCGTGTGAGCCATGCGCGTAACAATATGCTAAACCGCAGTGGTAAGGTCAATGC
ACTGCTAGGTAGTCGAGAAATTGAGGCGTTTTGTCCCTTGCACAAGAGTGATGCTGAGTTTCTTGAAACCGCTTTGCACC
GTTTAGGACTCTCGATTCGTGCGTATCATCGTATTATCAAAGTGGCGCGAACAATCGCCGATCTGGATGGGGCGGAGCAA
ATTGAACGAACGCACTTGGCTGAAGCTCTTGGGTATCGAGCGATGGACCGTTTGCTGAAACAGCTTACGGCGCAAGCGGT
ATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.28

100

0.943
  comM Vibrio cholerae strain A1552

84.813

100

0.848
  comM Haemophilus influenzae Rd KW20

65.286

100

0.653
  comM Glaesserella parasuis strain SC1401

64.118

100

0.645
  comM Legionella pneumophila str. Paris

48.79

97.83

0.477
  comM Legionella pneumophila strain ERS1305867

48.79

97.83

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

99.803

0.432

Multiple sequence alignment