Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   GPY28_RS00945 Genome accession   NZ_CP046813
Coordinates   23846..25027 (-) Length   393 a.a.
NCBI ID   WP_053349163.1    Uniprot ID   A0AAW9AWG5
Organism   Vibrio alginolyticus strain 2010V-1102     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 18846..30027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY28_RS00930 - 20077..20625 (+) 549 WP_005376525.1 GNAT family N-acetyltransferase -
  GPY28_RS00935 - 20716..21333 (-) 618 WP_025767847.1 HAD family phosphatase -
  GPY28_RS00940 cqsS 21697..23742 (+) 2046 WP_053303516.1 response regulator Regulator
  GPY28_RS00945 cqsA 23846..25027 (-) 1182 WP_053349163.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPY28_RS00950 ylqF 25365..26309 (-) 945 WP_005376521.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43623.85 Da        Isoelectric Point: 6.3840

>NTDB_id=408206 GPY28_RS00945 WP_053349163.1 23846..25027(-) (cqsA) [Vibrio alginolyticus strain 2010V-1102]
MSETIQSKPLPSFIEERLDFYIQDLIEPNENKKHLVLGKRPPCNAVVLQSNDYLALSHNKEIQNAHRDAISQHDDNVVMS
AIFLQDDESKPAFETQLASFVGMPSCLLSQSGWAANVGLLQTICAPNIPVYIDFFAHMSLWEGARIAGAQIHPFMHNNTS
HLRKQISRHGSGIIVVDSVYSTIGTIAPLRDIYEIAQEFDCGLVVDESHSLGTHGPQGAGILQGLGLTHKVDFITVSLAK
TFAYRAGAILGPEKLAKTLPFVAYPAIFSSTVLPQEIIRLEKTLDVIRKSDDKRDILFERAKSLAVGLKRIGFTIRSESQ
IIALECGNERNTERVRDFLEERNVYGAVFCRPATGRNKNIIRFSVNADMTAAEVDHVLTVCQQAFAHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=408206 GPY28_RS00945 WP_053349163.1 23846..25027(-) (cqsA) [Vibrio alginolyticus strain 2010V-1102]
ATGAGTGAAACTATACAAAGCAAACCACTTCCCTCCTTTATCGAGGAACGCCTAGATTTTTATATTCAAGATCTAATCGA
ACCGAATGAGAACAAAAAACACCTTGTTCTTGGTAAACGCCCACCGTGTAATGCCGTTGTCCTGCAAAGCAATGATTACC
TTGCACTGTCTCATAACAAGGAGATTCAAAACGCGCATCGTGATGCGATTTCCCAGCACGATGACAACGTCGTGATGTCC
GCGATTTTCTTACAAGATGATGAATCGAAACCTGCATTTGAAACGCAACTAGCCAGTTTCGTTGGTATGCCTAGTTGTCT
ACTTTCTCAATCTGGTTGGGCTGCGAATGTCGGTTTATTGCAGACTATTTGTGCACCGAACATACCTGTGTACATTGATT
TCTTTGCACATATGTCTTTGTGGGAAGGCGCACGTATTGCCGGAGCACAAATTCATCCGTTCATGCATAACAACACCAGT
CACCTAAGAAAACAGATTTCACGTCACGGTTCAGGGATCATTGTTGTGGATTCGGTTTACAGCACTATCGGGACCATCGC
TCCTCTACGTGATATCTACGAAATAGCACAGGAGTTTGACTGCGGCCTGGTTGTAGATGAATCACACTCTTTAGGTACAC
ACGGTCCACAAGGTGCGGGGATACTGCAGGGTCTTGGCTTAACTCATAAGGTAGATTTTATTACCGTTAGTCTTGCCAAG
ACATTTGCTTATCGTGCTGGCGCGATTTTAGGCCCAGAAAAACTGGCGAAGACGCTTCCATTTGTGGCGTACCCTGCAAT
ATTTAGTTCTACCGTATTACCGCAAGAGATCATTCGGCTAGAGAAAACACTGGACGTCATAAGAAAATCAGATGATAAGC
GAGATATTCTGTTTGAAAGAGCCAAGTCTTTAGCCGTTGGTTTAAAACGCATTGGATTTACTATTCGCAGTGAATCACAA
ATTATCGCATTAGAATGCGGCAACGAGAGAAACACTGAGCGAGTCCGCGACTTTCTCGAAGAGCGAAATGTTTACGGCGC
AGTGTTTTGCCGCCCTGCAACTGGAAGGAACAAAAACATCATCCGTTTTTCAGTCAATGCAGACATGACAGCTGCTGAAG
TTGATCATGTACTCACTGTCTGCCAACAAGCATTTGCACACCCTGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.623

98.473

0.567

Multiple sequence alignment