Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   GPY15_RS17195 Genome accession   NZ_CP046811
Coordinates   367728..368927 (-) Length   399 a.a.
NCBI ID   WP_050778560.1    Uniprot ID   -
Organism   Grimontia hollisae strain 1078-81     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 362728..373927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY15_RS17180 - 364419..364826 (-) 408 WP_233265769.1 NADAR family protein -
  GPY15_RS17185 - 364963..365145 (+) 183 WP_309543984.1 UxaA family hydrolase -
  GPY15_RS17190 - 365585..367642 (+) 2058 WP_040528899.1 hybrid sensor histidine kinase/response regulator -
  GPY15_RS17195 cqsA 367728..368927 (-) 1200 WP_050778560.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPY15_RS17200 - 369343..369972 (-) 630 WP_040528898.1 class II aldolase/adducin family protein -
  GPY15_RS17205 - 370548..371081 (-) 534 WP_158162564.1 NUDIX domain-containing protein -
  GPY15_RS17210 yeiP 371257..371832 (+) 576 WP_005504987.1 elongation factor P-like protein YeiP -
  GPY15_RS17215 yegS 371937..372872 (+) 936 WP_229333367.1 lipid kinase YegS -
  GPY15_RS17220 trxC 373074..373502 (+) 429 WP_115660329.1 thioredoxin TrxC -

Sequence

Protein


Download         Length: 399 a.a.        Molecular weight: 44013.12 Da        Isoelectric Point: 5.1480

>NTDB_id=408203 GPY15_RS17195 WP_050778560.1 367728..368927(-) (cqsA) [Grimontia hollisae strain 1078-81]
METPSTPSTSIYKKKLPSFVEARLNSFLRDMTEPYENRRPLPVSSRPGEGAVIMQSNDYLALSFDDDIQTAHLNAIKTTN
ENVVMSAVFLQDAEHKPEFEKRLAEFIGMDGCVLSQSGWTANVGLLQTICEPGTHVYIDFFAHMSLWEGARIAGAQVIPF
MHNSVSNLKRQIKKHGPGIILVDSVYSTIGTVAPLPAICELAKELDCALVVDESHSLGTHGPGGSGLINEMEVRDQVDFV
TTSLAKAFAYRAGAVLGPDNLIIALPFVSFPAIFSSTVLPQEVARLEATLDVIQNSDDKRRRLFEISDVLRAGLKEIGFN
IRSESQIISLECGDEQNTEHVRDFLESKGVFGAVFCSPATPKNKAIIRFSLNADMSYREVDHVLTVCQAAYNHPDLRFY

Nucleotide


Download         Length: 1200 bp        

>NTDB_id=408203 GPY15_RS17195 WP_050778560.1 367728..368927(-) (cqsA) [Grimontia hollisae strain 1078-81]
ATGGAAACCCCATCTACTCCATCTACATCTATATATAAAAAAAAACTCCCTTCTTTTGTCGAGGCTCGTCTGAATTCGTT
TCTGCGCGATATGACAGAGCCTTATGAAAACCGACGGCCACTGCCTGTTAGCAGCCGACCCGGAGAGGGAGCCGTAATCA
TGCAGAGTAATGATTACCTCGCGCTTAGCTTTGATGACGATATTCAAACTGCACATTTGAATGCAATTAAAACGACGAAT
GAAAACGTCGTGATGTCAGCGGTATTCTTACAAGATGCTGAGCATAAGCCGGAGTTTGAAAAGCGCCTGGCTGAATTTAT
CGGCATGGATGGGTGTGTATTATCTCAATCTGGCTGGACGGCGAATGTCGGCTTGCTACAAACCATTTGTGAGCCCGGTA
CTCACGTCTATATTGATTTCTTTGCCCATATGTCATTGTGGGAAGGCGCTCGGATAGCAGGAGCTCAAGTTATCCCTTTC
ATGCACAACAGCGTTTCTAATCTCAAGCGACAAATAAAAAAACATGGTCCCGGCATCATTTTGGTGGATTCGGTTTACAG
CACCATCGGTACTGTTGCACCGCTCCCGGCGATCTGTGAATTGGCCAAAGAACTGGATTGTGCGCTGGTGGTTGATGAAT
CACATTCTTTGGGCACTCATGGTCCTGGCGGTTCGGGTCTGATTAACGAAATGGAGGTACGGGACCAGGTAGATTTTGTC
ACTACCAGCCTTGCTAAGGCATTTGCTTACCGGGCTGGGGCGGTATTGGGTCCGGACAATTTGATCATTGCATTACCGTT
TGTGTCTTTTCCGGCAATTTTCAGTTCTACTGTTTTGCCTCAGGAAGTTGCCCGGCTTGAGGCAACTCTTGATGTGATCC
AAAACAGTGATGACAAGCGAAGGCGGCTTTTTGAAATATCTGATGTCTTGCGTGCGGGGTTGAAGGAGATTGGTTTTAAT
ATTCGCAGTGAATCCCAAATCATCTCCCTAGAGTGCGGTGATGAGCAGAATACGGAACATGTCCGGGACTTTCTGGAAAG
CAAGGGGGTGTTTGGGGCGGTATTTTGTTCACCGGCAACACCGAAGAACAAGGCCATTATCCGTTTCTCATTGAATGCAG
ATATGAGCTACCGGGAAGTGGATCATGTGCTGACTGTTTGTCAGGCAGCATACAACCACCCAGATCTTCGTTTCTATTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(74-384)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

52.85

96.742

0.511

Multiple sequence alignment