Detailed information NTG0408202

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: GPY15_RS15350
• Genome accession: NZ_CP046810
• Coordinates: 3316089..3319466 (-)
• Length: 1125 a.a.
• NCBI ID: WP_154124714.1
• Uniprot ID: -
• Organism: Grimontia hollisae strain 1078-81
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 3311089..3324466

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY15_RS15335	-	3311587..3312615 (-)	1029	WP_005503959.1	ABC transporter permease	-
GPY15_RS15340	-	3312618..3313604 (-)	987	WP_005503958.1	ABC transporter permease	-
GPY15_RS15345	-	3313724..3315406 (-)	1683	WP_158162261.1	ABC transporter substrate-binding protein	-
GPY15_RS15350	chiS	3316089..3319466 (-)	3378	WP_154124714.1	response regulator	Regulator
GPY15_RS15355	rsmC	3319700..3320725 (-)	1026	WP_158162263.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
GPY15_RS15360	-	3320807..3321889 (-)	1083	WP_005503954.1	AI-2E family transporter	-
GPY15_RS15365	hemL	3322135..3323424 (-)	1290	WP_158162265.1	glutamate-1-semialdehyde 2,1-aminomutase	-
GPY15_RS15370	erpA	3323657..3323998 (+)	342	WP_040528752.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1125 a.a.
• Molecular weight: 127083.02 Da
• Isoelectric Point: 5.6731

>NTDB_id=408202 GPY15_RS15350 WP_154124714.1 3316089..3319466(-) (chiS) [Grimontia hollisae strain 1078-81]
MQKKQKFKRLKHTLMLAFLVLSITPLTLLAIFFLESHSSDLEQQSTTHLSFLRDNKKEQIISYFAARQSEVKSFSRSELA
TASGGRFYGLIAAFHQLGDTEKEARKAARERYAVSPPQNQAQTPQDANFIGSERYRLLHKRYDWAYKEHLKRSDFSDILL
VDIHGNVAYSALKDDVFAANLLSEQWRDTAIGKTFAELHDIANTPLVDDDDMPIVFSDFSQQENGEMVAWFAAPIIQQGY
LHSYVLFRLTNTTLDKMLKTSPQEKGYISTLLVGSDMIPRNIVSTERLTPINSNAIEAALSGLRDVGSFLSPNNERVLGA
YAPVQIQDKTWALILELPEEEAFARIYQLEKIFVVVMVIAILLVVIGSHLLSHSITAPLLKLTWAAEQVSAGDLDQKINN
TDREDEIGRLAVSFARMQRSVRDKLALIREQNKELEQNIQLIKQKNEELQQADRMKDDFLATTSHELRTPLHGMVGIAES
MLAGAEGPLPERQKHQLRMIINSGERLSNLVDDLLDYHKMRYGDVEISPQAVDTANAVRLVIELSSRLLGGKPVRIINQV
PIDLPLVRADGQRLEQVLYNLIGNAIKYTDEGKIIISATVLQGQLRIQVVDTGQGIPSDQLEYIFEPLTQARESNTQYRQ
GAGLGLSISRQLIDIMGGQLYVSSQPMVGTTFSFTLPLATEEDKAKTRLANNVHFAAPHAELEPVDYTQLPENPDGPLIL
VVDDEPVNLQILNNFLRLEGYRVKAVENGRQAIEFITMEKPALMLLDVMMPELSGYEVCTHLRERYSRAELPIIMLSALG
QVQDKVKGFDAGANDYLTKPFNKDELSARIRAYINASLTEQEREQNRALQKEIHFREQVEAGLREVQNRLLGMLDTASEG
IICVQEGGRITYANDACSEIFHLSAEQIERHQLDDFLAMALPEPEASRGHYSGQFRFKVEGDIVNIETDLITLPESSGLQ
MMLILNTGKKASSHRVHLLENAVSALADYAYDGDLEKLQQLRELGGEFTRMADRFSGNKPDKASILRETLVKVMTMTLSY
WSHSTGKTKFDLAEESGLWRVYLDRSTLQTRTLDKYLHVETVPKSPRWRTVISTIDFVLERCSDKSKERSELEILRERLQ
KLIAR

Nucleotide

• Length: 3378 bp

>NTDB_id=408202 GPY15_RS15350 WP_154124714.1 3316089..3319466(-) (chiS) [Grimontia hollisae strain 1078-81]
ATGCAAAAAAAACAGAAATTCAAGCGATTGAAGCACACGCTGATGCTCGCTTTTCTGGTGCTGAGTATTACGCCTCTCAC
CCTGCTGGCGATCTTCTTTTTGGAATCTCACAGCAGCGATCTCGAACAACAGAGCACCACGCACCTTTCCTTCCTTCGTG
ACAATAAGAAAGAGCAAATCATCAGTTATTTTGCGGCGCGTCAGTCCGAAGTAAAATCCTTCAGCCGTTCTGAACTGGCT
ACTGCCAGCGGTGGCCGTTTTTATGGTTTGATCGCCGCTTTCCATCAGCTTGGCGATACGGAAAAAGAAGCACGCAAAGC
GGCACGTGAACGATACGCGGTTTCCCCACCCCAGAACCAGGCCCAAACACCCCAAGATGCCAACTTCATTGGTAGCGAAC
GCTATCGCCTGCTTCACAAACGCTATGACTGGGCCTACAAGGAGCACCTGAAGCGTTCGGATTTTTCTGACATCCTGCTT
GTCGATATCCACGGCAATGTGGCGTATTCCGCATTGAAAGATGATGTGTTTGCCGCCAATCTGTTGTCTGAACAATGGCG
TGATACCGCCATCGGCAAAACCTTTGCTGAACTCCATGATATTGCCAATACCCCGTTGGTTGATGACGACGATATGCCTA
TCGTTTTCAGCGATTTTTCCCAGCAGGAAAACGGCGAGATGGTGGCCTGGTTTGCTGCCCCCATCATCCAGCAGGGATAT
CTACACAGCTATGTGTTGTTCCGGCTGACAAATACAACACTGGATAAGATGCTAAAAACGTCCCCGCAGGAAAAGGGGTA
TATCAGCACCCTCCTGGTGGGAAGCGACATGATCCCGCGAAATATTGTCAGCACAGAAAGGCTCACCCCAATCAATAGCA
ACGCCATTGAAGCGGCGCTATCCGGGCTTCGTGATGTCGGCAGTTTCCTCAGCCCCAACAATGAGCGTGTACTCGGCGCT
TACGCACCGGTTCAGATACAGGATAAAACCTGGGCACTTATTCTCGAATTACCGGAAGAGGAGGCATTCGCCCGCATCTA
TCAGCTGGAAAAAATTTTTGTGGTCGTCATGGTGATCGCTATCTTACTGGTCGTCATCGGCTCACACCTTCTGTCTCATT
CTATTACCGCACCACTGTTGAAGCTCACCTGGGCTGCGGAGCAAGTCTCAGCAGGCGATCTGGACCAGAAGATAAACAAT
ACCGATCGTGAAGATGAAATTGGCCGGCTTGCGGTCAGCTTTGCCCGTATGCAGCGCTCAGTACGTGACAAACTGGCGCT
TATTCGCGAGCAAAATAAGGAGCTTGAGCAAAACATTCAGCTTATCAAGCAAAAGAATGAAGAGTTACAGCAAGCAGATC
GAATGAAGGATGACTTCCTTGCCACTACATCCCATGAGCTTCGCACACCGCTTCACGGCATGGTAGGGATTGCTGAATCG
ATGCTTGCCGGGGCTGAAGGGCCACTACCGGAGCGCCAGAAGCACCAGCTTCGTATGATCATCAACAGCGGTGAACGCCT
GTCTAACCTGGTAGATGATCTGCTCGATTACCATAAGATGCGCTATGGCGATGTGGAGATCTCCCCACAAGCCGTTGACA
CTGCCAATGCCGTACGTCTGGTGATTGAACTTTCCAGCCGCCTGTTGGGCGGAAAACCGGTACGCATCATCAACCAGGTT
CCCATTGACCTGCCACTTGTCAGGGCTGATGGACAGCGGCTCGAACAAGTGCTTTACAACCTGATAGGCAATGCCATTAA
GTATACTGACGAAGGGAAAATCATCATTTCCGCGACGGTACTGCAAGGGCAGTTACGGATCCAGGTGGTGGATACCGGTC
AGGGCATTCCTTCCGATCAGTTGGAATACATCTTTGAACCACTGACGCAGGCCAGAGAATCCAACACCCAGTATCGCCAG
GGCGCCGGGCTCGGCCTTTCAATCAGTCGTCAATTGATTGATATCATGGGCGGCCAGTTGTATGTCTCCAGCCAGCCTAT
GGTCGGCACAACATTCAGCTTCACCTTGCCCCTAGCCACCGAAGAAGATAAAGCAAAAACACGTCTTGCCAACAACGTGC
ACTTTGCTGCCCCACATGCCGAGCTTGAGCCGGTTGATTACACCCAGTTGCCGGAAAATCCGGACGGCCCCCTTATTCTG
GTTGTCGACGATGAACCAGTGAACCTGCAAATTCTCAACAACTTCCTGCGTCTGGAGGGGTATCGTGTCAAGGCCGTAGA
AAATGGTCGGCAAGCCATTGAGTTCATCACCATGGAAAAACCGGCACTGATGCTGCTTGACGTGATGATGCCAGAGCTCA
GCGGGTATGAAGTATGCACTCACCTTCGTGAGCGCTACAGTCGTGCTGAGTTGCCGATCATTATGCTCTCTGCACTGGGA
CAGGTTCAGGATAAAGTGAAGGGCTTTGATGCCGGTGCCAACGATTACCTGACTAAGCCGTTTAATAAAGATGAGCTTAG
TGCCCGCATCCGTGCCTATATTAATGCCTCCCTGACAGAACAGGAGCGGGAACAAAACCGTGCCCTGCAAAAAGAAATCC
ACTTCAGGGAGCAAGTGGAAGCGGGCCTTAGGGAGGTGCAAAACCGACTGCTCGGCATGCTGGATACCGCCTCGGAAGGC
ATTATCTGCGTACAGGAAGGTGGACGTATAACCTATGCCAACGATGCTTGCAGTGAGATTTTCCATTTAAGTGCCGAGCA
GATTGAGCGTCACCAACTGGATGACTTCCTTGCCATGGCACTACCTGAGCCAGAAGCAAGCCGGGGTCATTACAGTGGTC
AGTTCAGGTTCAAGGTAGAAGGCGACATTGTCAATATTGAGACCGATCTCATCACGTTGCCAGAGTCATCAGGCCTGCAG
ATGATGCTTATCCTGAACACCGGTAAAAAAGCCTCATCACACCGGGTACACCTGCTGGAGAATGCGGTATCAGCCCTCGC
CGATTATGCTTATGACGGCGATCTGGAGAAACTGCAACAACTCAGGGAACTGGGTGGGGAGTTTACCCGTATGGCAGACC
GTTTCTCAGGTAACAAGCCGGACAAAGCCAGTATACTGCGTGAAACCTTAGTAAAGGTCATGACCATGACACTGAGCTAC
TGGAGCCACTCAACCGGAAAGACCAAGTTTGATCTTGCAGAAGAAAGCGGCTTGTGGCGTGTGTATCTGGACCGAAGCAC
CCTACAAACCCGGACACTGGATAAATACCTGCACGTCGAGACAGTACCCAAATCCCCGCGCTGGCGCACGGTGATCAGCA
CGATTGACTTTGTATTGGAACGCTGCAGCGATAAGAGCAAAGAGCGAAGCGAACTCGAAATACTCAGGGAGCGTCTCCAA
AAACTGATTGCCCGCTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (719-831)

• PAS domain (PAS_8) (869-925)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (570-679)

• His Kinase A (phospho-acceptor) domain (HisKA) (455-521)

• HAMP domain (HAMP) (370-422)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	56.394	100	0.564