Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | H0N28_RS14980 | Genome accession | NZ_CP059041 |
| Coordinates | 3170781..3171296 (+) | Length | 171 a.a. |
| NCBI ID | WP_000477155.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain ATCC 17978 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3165781..3176296
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H0N28_RS14960 (H0N28_14965) | - | 3166101..3167561 (+) | 1461 | WP_000004971.1 | amino acid permease | - |
| H0N28_RS14965 (H0N28_14970) | - | 3167837..3169042 (+) | 1206 | WP_000512695.1 | RtcB family protein | - |
| H0N28_RS14970 (H0N28_14975) | - | 3169046..3169204 (+) | 159 | WP_000692859.1 | hypothetical protein | - |
| H0N28_RS14975 (H0N28_14980) | omp38 | 3169329..3170399 (-) | 1071 | WP_000777879.1 | outer membrane protein Omp38 | - |
| H0N28_RS14980 (H0N28_14985) | fimT | 3170781..3171296 (+) | 516 | WP_000477155.1 | GspH/FimT family pseudopilin | Machinery gene |
| H0N28_RS14985 (H0N28_14990) | - | 3171405..3172580 (+) | 1176 | WP_000129971.1 | thiolase family protein | - |
| H0N28_RS14990 (H0N28_14995) | - | 3172707..3173150 (+) | 444 | WP_001176578.1 | VOC family protein | - |
| H0N28_RS14995 (H0N28_15000) | - | 3173193..3173546 (-) | 354 | WP_000457783.1 | DMT family transporter | - |
| H0N28_RS15000 (H0N28_15005) | - | 3173629..3174114 (-) | 486 | WP_000935247.1 | DUF934 domain-containing protein | - |
| H0N28_RS15005 (H0N28_15010) | - | 3174107..3175750 (-) | 1644 | WP_000281766.1 | nitrite/sulfite reductase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19608.83 Da Isoelectric Point: 8.8196
>NTDB_id=408202 H0N28_RS14980 WP_000477155.1 3170781..3171296(+) (fimT) [Acinetobacter baumannii strain ATCC 17978]
MFKSPGFTTVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRLISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTTVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRLISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=408202 H0N28_RS14980 WP_000477155.1 3170781..3171296(+) (fimT) [Acinetobacter baumannii strain ATCC 17978]
ATGTTTAAATCTCCTGGTTTTACTACAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTACTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCTTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTACAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTACTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCTTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
44.578 |
97.076 |
0.433 |