Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DELCS14_RS01575 Genome accession   NC_015563
Coordinates   363635..365020 (+) Length   461 a.a.
NCBI ID   WP_034397813.1    Uniprot ID   -
Organism   Delftia sp. Cs1-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 358635..370020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DELCS14_RS01550 (DelCs14_0318) lplT 359458..360759 (-) 1302 WP_013800185.1 lysophospholipid transporter LplT -
  DELCS14_RS01555 (DelCs14_0319) alr 360894..361997 (+) 1104 WP_013800186.1 alanine racemase -
  DELCS14_RS01560 (DelCs14_0320) - 361998..362438 (-) 441 WP_012202251.1 MarR family transcriptional regulator -
  DELCS14_RS01565 (DelCs14_0321) - 362535..363347 (+) 813 WP_012202252.1 siderophore-interacting protein -
  DELCS14_RS01575 (DelCs14_0322) radA 363635..365020 (+) 1386 WP_034397813.1 DNA repair protein RadA Machinery gene
  DELCS14_RS01580 (DelCs14_0323) - 365100..365540 (+) 441 WP_013800187.1 hypothetical protein -
  DELCS14_RS01585 (DelCs14_0324) - 365585..366523 (+) 939 WP_013800188.1 branched-chain amino acid transaminase -
  DELCS14_RS01590 (DelCs14_0325) - 366559..366768 (+) 210 WP_012202256.1 zinc-finger domain-containing protein -
  DELCS14_RS01595 (DelCs14_0326) - 366800..367666 (-) 867 WP_013800189.1 capsular polysaccharide synthesis protein -
  DELCS14_RS01600 (DelCs14_0327) - 367798..369066 (+) 1269 WP_013800190.1 O-antigen ligase family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48142.71 Da        Isoelectric Point: 7.6673

>NTDB_id=40819 DELCS14_RS01575 WP_034397813.1 363635..365020(+) (radA) [Delftia sp. Cs1-4]
MAKDKTTFICNACGGTSPRWLGKCPACGAWNSLIEAVAEPASAGKNRLSQPQGYAGLANVQAVMPLSAIEAQDVARTPSG
IEELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQAMDALHRVGLPTLYVTGEESGAQVALRSRRLGLEASQVNVLAEIQL
EKILATMEATQPAVVVIDSIQTVYSDQLSSAPGSVAQVRECAAHLTRAAKTTGITVILVGHVTKEGALAGPRVLEHMVDT
VLYFEGDTHSNFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVTNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVD
QGGPAPRRLSVGLDRDRLAMLLAVLSRHAGVACADQDVFVNAVGGVRISEPAADLAVMLSITSSLRGRALPKGFLAFGEV
GLAGEVRPAPRGQERLKEAAKLGFTMAVVPKANAPKKAIAGLTVHAVERVDEAMNIVRGMG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=40819 DELCS14_RS01575 WP_034397813.1 363635..365020(+) (radA) [Delftia sp. Cs1-4]
ATGGCCAAAGACAAAACCACGTTCATCTGCAATGCCTGCGGAGGCACCAGCCCGCGCTGGCTGGGCAAGTGCCCGGCCTG
CGGGGCCTGGAACTCGCTGATCGAGGCCGTTGCCGAGCCTGCGAGCGCGGGCAAGAACCGGCTCAGCCAGCCCCAGGGCT
ATGCGGGCCTGGCCAATGTCCAGGCCGTGATGCCGCTGTCGGCCATCGAGGCCCAGGACGTGGCGCGCACGCCCAGCGGC
ATCGAGGAGCTGGACCGCGTGCTGGGCGGCGGCATTGTCGAAGGCGGCGTGGTGCTGATTGGTGGCGATCCCGGCATCGG
CAAGTCCACCCTGCTGCTGCAGGCCATGGACGCGCTGCACCGCGTCGGCCTACCCACGCTGTATGTCACGGGCGAGGAAA
GCGGTGCCCAGGTCGCGCTGCGCTCGCGCCGCCTGGGGCTGGAGGCCAGCCAAGTCAACGTGCTGGCCGAGATCCAGCTG
GAGAAGATCCTCGCCACCATGGAGGCCACCCAGCCGGCCGTGGTCGTCATCGACTCCATACAGACCGTGTACTCGGATCA
GCTGTCCTCGGCACCGGGCTCGGTGGCCCAGGTGCGCGAATGCGCGGCCCACCTCACGCGCGCGGCCAAGACCACAGGCA
TCACCGTGATCCTGGTCGGCCATGTGACCAAGGAAGGCGCACTGGCCGGCCCGCGCGTGCTCGAGCACATGGTGGACACG
GTGCTCTACTTCGAGGGCGACACGCACAGCAACTTTCGCCTGGTGCGCGCCATCAAGAACCGCTTTGGTGCCGTCAACGA
GATCGGCGTCTTCGCCATGACGGAGAAGGGCCTCAAGGGCGTCACCAACCCCAGCGCCATCTTCCTGTCCCAGCACAGCG
AGCCCGTGCCCGGCTCCTGCGTGCTGGTCACGCTGGAGGGCACGCGCCCCATGCTGGTGGAGATACAGGCCCTGGTCGAT
CAGGGCGGCCCCGCGCCCCGGCGCCTGTCCGTGGGCCTGGACCGCGACCGGCTGGCCATGCTGCTGGCCGTGCTCAGCCG
CCACGCGGGTGTGGCCTGCGCGGACCAGGATGTGTTCGTCAACGCCGTGGGCGGCGTGCGCATCAGCGAGCCTGCGGCCG
ACCTGGCCGTCATGCTGTCCATCACCTCCAGCCTGCGTGGCCGCGCCCTGCCCAAGGGATTCCTCGCCTTTGGCGAAGTG
GGCCTGGCCGGCGAAGTGCGCCCCGCGCCGCGCGGCCAGGAGCGACTGAAGGAAGCGGCCAAGCTGGGCTTCACCATGGC
CGTGGTACCCAAGGCCAATGCGCCCAAGAAGGCTATTGCCGGTCTGACCGTGCATGCCGTCGAACGCGTGGACGAGGCCA
TGAACATCGTCCGAGGGATGGGCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.696

99.783

0.486
  radA Streptococcus mitis NCTC 12261

47.368

98.915

0.469
  radA Streptococcus mitis SK321

48.09

96.529

0.464
  radA Streptococcus pneumoniae TIGR4

47.982

96.746

0.464
  radA Streptococcus pneumoniae R6

47.982

96.746

0.464
  radA Streptococcus pneumoniae Rx1

47.982

96.746

0.464
  radA Streptococcus pneumoniae D39

47.982

96.746

0.464

Multiple sequence alignment