Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   H0N28_RS07890 Genome accession   NZ_CP059041
Coordinates   1685188..1685823 (+) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain ATCC 17978     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1680188..1690823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0N28_RS07865 (H0N28_07860) - 1681028..1682041 (+) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -
  H0N28_RS07870 (H0N28_07865) murU 1682041..1682730 (+) 690 WP_000646456.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  H0N28_RS07875 (H0N28_07870) rsmG 1682818..1683450 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  H0N28_RS07880 (H0N28_07875) - 1683472..1684254 (+) 783 WP_000057212.1 ParA family protein -
  H0N28_RS07885 (H0N28_07880) - 1684251..1685138 (+) 888 WP_000023426.1 ParB/RepB/Spo0J family partition protein -
  H0N28_RS07890 (H0N28_07885) exbB 1685188..1685823 (+) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  H0N28_RS07895 (H0N28_07890) - 1685839..1686267 (+) 429 WP_000669684.1 ExbD/TolR family protein -
  H0N28_RS07900 (H0N28_07895) msbA 1686264..1687991 (+) 1728 WP_001070732.1 lipid A export permease/ATP-binding protein MsbA -
  H0N28_RS07905 (H0N28_07900) lpxK 1687994..1689004 (+) 1011 WP_000050458.1 tetraacyldisaccharide 4'-kinase -
  H0N28_RS07910 (H0N28_07905) kdsB 1689014..1689775 (+) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H0N28_RS07915 (H0N28_07910) - 1689787..1690767 (+) 981 WP_001075412.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=408181 H0N28_RS07890 WP_000264037.1 1685188..1685823(+) (exbB) [Acinetobacter baumannii strain ATCC 17978]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=408181 H0N28_RS07890 WP_000264037.1 1685188..1685823(+) (exbB) [Acinetobacter baumannii strain ATCC 17978]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACTTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393

Multiple sequence alignment