Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   SSUD9_RS09935 Genome accession   NC_017620
Coordinates   2033958..2034407 (-) Length   149 a.a.
NCBI ID   WP_004298348.1    Uniprot ID   -
Organism   Streptococcus suis D9     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2028958..2039407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD9_RS09915 (SSUD9_2056) - 2029389..2029922 (-) 534 WP_004298356.1 histidine phosphatase family protein -
  SSUD9_RS09920 (SSUD9_2057) - 2029929..2030372 (-) 444 WP_004298354.1 dUTP diphosphatase -
  SSUD9_RS09925 (SSUD9_2058) - 2030474..2032258 (-) 1785 WP_004298352.1 ABC transporter ATP-binding protein -
  SSUD9_RS09930 (SSUD9_2059) - 2032259..2033965 (-) 1707 WP_004298350.1 ABC transporter ATP-binding protein -
  SSUD9_RS09935 (SSUD9_2060) rcrR 2033958..2034407 (-) 450 WP_004298348.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SSUD9_RS09940 (SSUD9_2061) - 2034629..2035645 (+) 1017 WP_004298347.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  SSUD9_RS09945 (SSUD9_2062) galU 2035691..2036590 (+) 900 WP_004298345.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  SSUD9_RS09950 (SSUD9_2063) - 2036609..2037286 (-) 678 WP_004298343.1 rhomboid family intramembrane serine protease -
  SSUD9_RS09955 (SSUD9_2064) - 2037270..2037812 (-) 543 WP_004298341.1 5-formyltetrahydrofolate cyclo-ligase -
  SSUD9_RS09960 (SSUD9_2065) - 2037854..2038939 (-) 1086 WP_014637214.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17631.12 Da        Isoelectric Point: 7.5575

>NTDB_id=40816 SSUD9_RS09935 WP_004298348.1 2033958..2034407(-) (rcrR) [Streptococcus suis D9]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSEVETFVKDIEAELRISKSVASNLVKRMEKNDFIR
VLPSQFDRRYKQLVLTEKGRSKICHLKSFHEEMHHSLFRGIQKEEFDLIRQVADQLKDNIQHYKEKNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=40816 SSUD9_RS09935 WP_004298348.1 2033958..2034407(-) (rcrR) [Streptococcus suis D9]
ATGGGACATACTATTGCAGATTTTCGGAATCTATTAAATCAGATTGAACAAATCAGTGAAACCATTGCAAAGGAATATGA
TGTGGAGCACCTAGCTGGACCACAGGGATGGGCTCTGCGTTTCATAGCAGAACGGTCTGAAGTTGAAACCTTTGTCAAAG
ACATTGAAGCGGAGTTGAGGATTTCCAAATCCGTTGCCAGCAATCTAGTTAAGCGAATGGAGAAAAATGACTTTATTCGG
GTTTTACCTTCTCAGTTTGACAGACGCTATAAGCAGTTGGTCTTGACAGAGAAAGGTCGGAGCAAGATTTGTCACCTAAA
ATCCTTCCATGAGGAGATGCACCATTCTCTCTTTCGAGGTATTCAAAAGGAAGAATTTGATTTGATCAGACAGGTAGCCG
ATCAATTAAAAGATAATATTCAACACTATAAGGAGAAGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.972

94.631

0.416

Multiple sequence alignment