Detailed information    

insolico Bioinformatically predicted

Overview

Name   MMJJ_RS05685   Type   Machinery gene
Locus tag   METIG_RS07400 Genome accession   NC_015562
Coordinates   1499373..1499603 (+) Length   76 a.a.
NCBI ID   WP_048055587.1    Uniprot ID   -
Organism   Methanotorris igneus Kol 5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1494373..1504603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  METIG_RS07375 (Metig_1458) - 1494417..1494866 (+) 450 WP_013799589.1 GbsR/MarR family transcriptional regulator -
  METIG_RS07380 (Metig_1459) - 1494887..1496047 (+) 1161 WP_013799590.1 RND family transporter -
  METIG_RS07385 (Metig_1460) - 1496037..1497611 (+) 1575 WP_013799591.1 COG1361 S-layer family protein -
  METIG_RS07390 (Metig_1461) - 1497715..1498872 (+) 1158 WP_013799592.1 MFS transporter -
  METIG_RS07395 (Metig_1462) cutA 1498876..1499184 (-) 309 WP_013799593.1 divalent-cation tolerance protein CutA -
  METIG_RS07400 (Metig_1463) MMJJ_RS05685 1499373..1499603 (+) 231 WP_048055587.1 class III signal peptide-containing protein Machinery gene
  METIG_RS07405 (Metig_1464) - 1499702..1499929 (+) 228 WP_048055588.1 class III signal peptide-containing protein -
  METIG_RS07410 (Metig_1465) - 1500259..1500813 (+) 555 WP_172632620.1 hypothetical protein -
  METIG_RS07415 (Metig_1466) - 1500920..1501564 (+) 645 WP_048055589.1 metallophosphoesterase -
  METIG_RS07420 (Metig_1467) - 1501806..1502285 (+) 480 WP_013799597.1 acylphosphatase -
  METIG_RS07425 (Metig_1468) recJ 1502291..1503673 (-) 1383 WP_013799598.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8095.47 Da        Isoelectric Point: 10.2295

>NTDB_id=40816 METIG_RS07400 WP_048055587.1 1499373..1499603(+) (MMJJ_RS05685) [Methanotorris igneus Kol 5]
MKLLRKLMSKRGQVSMEIGILVAAAVAVAAIAAYYYVTNVKTSAKGAGDTANKTIIKINKTVYSEVEGLNDTSTGW

Nucleotide


Download         Length: 231 bp        

>NTDB_id=40816 METIG_RS07400 WP_048055587.1 1499373..1499603(+) (MMJJ_RS05685) [Methanotorris igneus Kol 5]
ATGAAATTATTAAGAAAGTTAATGTCTAAAAGAGGGCAGGTCTCAATGGAAATAGGTATCTTAGTTGCTGCTGCAGTAGC
AGTTGCTGCTATTGCTGCGTACTACTATGTAACAAATGTTAAAACTTCAGCAAAAGGTGCAGGAGATACTGCAAATAAAA
CCATAATAAAAATAAATAAAACCGTTTATAGTGAAGTTGAAGGTTTAAATGACACAAGTACGGGTTGGTAA

Domains

Predicted by InterproScan.

Class III signal peptide (Class_IIIsignal)

(10-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  MMJJ_RS05685 Methanococcus maripaludis strain DSM 2067

57.143

92.105

0.526
  epdE Methanococcus maripaludis strain DSM 2067

59.259

71.053

0.421

Multiple sequence alignment