Detailed information NTG0408153

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GP469_RS10375
• Genome accession: NZ_CP046808
• Coordinates: 2064787..2065776 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain 2013V-1146
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2059787..2070776

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GP469_RS10340	ftsB	2059795..2060076 (+)	282	WP_005455577.1	cell division protein FtsB	-
GP469_RS10345	ispD	2060078..2060782 (+)	705	WP_005493934.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GP469_RS10350	ispF	2060800..2061276 (+)	477	WP_005493937.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GP469_RS10355	truD	2061323..2062366 (+)	1044	WP_005493940.1	tRNA pseudouridine(13) synthase TruD	-
GP469_RS10360	surE	2062366..2063142 (+)	777	WP_005493942.1	5'/3'-nucleotidase SurE	-
GP469_RS10365	-	2063142..2063768 (+)	627	WP_158153161.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GP469_RS10370	-	2063783..2064706 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
GP469_RS10375	rpoS	2064787..2065776 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
GP469_RS10380	mutS	2065856..2068417 (-)	2562	WP_005493944.1	DNA mismatch repair protein MutS	-
GP469_RS10385	pncC	2068502..2068984 (+)	483	WP_005493945.1	nicotinamide-nucleotide amidase	-
GP469_RS10390	recA	2069185..2070228 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=408153 GP469_RS10375 WP_005478537.1 2064787..2065776(+) (rpoS) [Vibrio parahaemolyticus strain 2013V-1146]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=408153 GP469_RS10375 WP_005478537.1 2064787..2065776(+) (rpoS) [Vibrio parahaemolyticus strain 2013V-1146]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGTAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACACTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CTCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATTCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851