Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   GP469_RS09220 Genome accession   NZ_CP046808
Coordinates   1844465..1845043 (+) Length   192 a.a.
NCBI ID   WP_005496569.1    Uniprot ID   A0AAX0M4K7
Organism   Vibrio parahaemolyticus strain 2013V-1146     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1839465..1850043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GP469_RS09205 oxyR 1839788..1840696 (+) 909 WP_005465160.1 DNA-binding transcriptional regulator OxyR -
  GP469_RS09210 - 1840752..1843322 (-) 2571 WP_005496567.1 PBP1A family penicillin-binding protein -
  GP469_RS09215 pilM 1843465..1844481 (+) 1017 WP_005496568.1 type IV pilus assembly protein PilM Machinery gene
  GP469_RS09220 pilN 1844465..1845043 (+) 579 WP_005496569.1 PilN domain-containing protein Machinery gene
  GP469_RS09225 pilO 1845036..1845629 (+) 594 WP_005496571.1 type 4a pilus biogenesis protein PilO Machinery gene
  GP469_RS09230 pilP 1845619..1846134 (+) 516 WP_005454781.1 pilus assembly protein PilP Machinery gene
  GP469_RS09235 pilQ 1846166..1847914 (+) 1749 WP_005488227.1 type IV pilus secretin PilQ family protein Machinery gene
  GP469_RS09240 aroK 1848103..1848621 (+) 519 WP_005381319.1 shikimate kinase AroK -
  GP469_RS09245 aroB 1848653..1849753 (+) 1101 WP_005496576.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22478.98 Da        Isoelectric Point: 7.0769

>NTDB_id=408144 GP469_RS09220 WP_005496569.1 1844465..1845043(+) (pilN) [Vibrio parahaemolyticus strain 2013V-1146]
MLYRINLLHWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG

Nucleotide


Download         Length: 579 bp        

>NTDB_id=408144 GP469_RS09220 WP_005496569.1 1844465..1845043(+) (pilN) [Vibrio parahaemolyticus strain 2013V-1146]
GTGCTGTATCGCATTAACTTATTGCATTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTAGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCTCGGCTAGCAACCATGCTCGATAACATGGAGCGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTCGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTCAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

83.333

100

0.833
  pilN Vibrio cholerae strain A1552

62.431

94.271

0.589

Multiple sequence alignment