Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GPY47_RS20115 Genome accession   NZ_CP046806
Coordinates   2529774..2530781 (-) Length   335 a.a.
NCBI ID   WP_158157177.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 2439-01     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2524774..2535781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY47_RS20100 hslU 2526977..2528308 (-) 1332 WP_005397950.1 HslU--HslV peptidase ATPase subunit -
  GPY47_RS20105 hslV 2528332..2528883 (-) 552 WP_005383176.1 ATP-dependent protease subunit HslV -
  GPY47_RS20110 ftsN 2529000..2529548 (-) 549 WP_158157175.1 cell division protein FtsN -
  GPY47_RS20115 cytR 2529774..2530781 (-) 1008 WP_158157177.1 DNA-binding transcriptional regulator CytR Regulator
  GPY47_RS20120 priA 2531106..2533310 (-) 2205 WP_158157179.1 primosomal protein N' -
  GPY47_RS20130 rpmE 2533607..2533828 (+) 222 WP_005379546.1 50S ribosomal protein L31 -
  GPY47_RS20135 rpsJ 2534285..2534596 (+) 312 WP_004410492.1 30S ribosomal protein S10 -
  GPY47_RS20140 rplC 2534611..2535240 (+) 630 WP_005379555.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36879.42 Da        Isoelectric Point: 6.2447

>NTDB_id=408118 GPY47_RS20115 WP_158157177.1 2529774..2530781(-) (cytR) [Vibrio alginolyticus strain 2439-01]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGITKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVHSGSRLLE
TNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=408118 GPY47_RS20115 WP_158157177.1 2529774..2530781(-) (cytR) [Vibrio alginolyticus strain 2439-01]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCGAGCCTTAATGAATCCAGAGAA
AGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTCCAAACTCATTAGCGCGTAACT
TACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTATTTTTCTGAAATTATTCGCGGT
ATTGAAGATGCAGCCATGGAACATGGCTATCTAGTCCTGCTGGGCGATAGCGGACAACAGAAGAAACGCGAAAGCTCTTT
CGTTAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTACCATTCGATGTCAGTAAGCCAG
AGCAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCAGAGCTCGAGCTTCCGACAGTACATATTGATAAC
CTGACCTCAGCATTTGAAGCAGTGAATTACCTGACTCAATTAGGTCATAAACGCATTGCTCAAATCTCTGGACCAGATAC
AGCAATATTGTGTCAGTTCCGCCAACAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCATCACTAAAGATCCACAGTATA
GTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAATTGCCAGAACCACCAACGGCT
ATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGGCTTACGAGTACCGCAAGATCT
CTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCACCATCTCTCAACCTCGCTATG
AGATTGGTCGACAAGCGATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCATTCAGGCTCGCGTCTGCTTGAA
ACTAATCTCGTCATTCGTGGAAGTGCAGCGCCACCACAGCGTCCTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

98.204

99.701

0.979
  cytR Vibrio cholerae C6706

89.82

99.701

0.896

Multiple sequence alignment