Detailed information NTG0408098

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GPY47_RS15830
• Genome accession: NZ_CP046806
• Coordinates: 1656662..1657648 (-)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain 2439-01
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1651662..1662648

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY47_RS15815	recA	1652207..1653250 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
GPY47_RS15820	pncC	1653451..1653933 (-)	483	WP_005383794.1	nicotinamide-nucleotide amidase	-
GPY47_RS15825	mutS	1654018..1656579 (+)	2562	WP_025768847.1	DNA mismatch repair protein MutS	-
GPY47_RS15830	rpoS	1656662..1657648 (-)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
GPY47_RS15835	-	1657729..1658652 (-)	924	WP_017633546.1	peptidoglycan DD-metalloendopeptidase family protein	-
GPY47_RS15840	-	1658666..1659292 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GPY47_RS15845	surE	1659292..1660068 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
GPY47_RS15850	truD	1660068..1661111 (-)	1044	WP_017821624.1	tRNA pseudouridine(13) synthase TruD	-
GPY47_RS15855	ispF	1661157..1661633 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GPY47_RS15860	ispD	1661648..1662355 (-)	708	WP_017821625.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GPY47_RS15865	ftsB	1662357..1662638 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=408098 GPY47_RS15830 WP_005380887.1 1656662..1657648(-) (rpoS) [Vibrio alginolyticus strain 2439-01]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=408098 GPY47_RS15830 WP_005380887.1 1656662..1657648(-) (rpoS) [Vibrio alginolyticus strain 2439-01]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTTGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACGTGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCATGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGACGCTTCGGCCTACTAGGCTATGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854