Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY47_RS15695 Genome accession   NZ_CP046806
Coordinates   1634495..1635013 (-) Length   172 a.a.
NCBI ID   WP_005379945.1    Uniprot ID   A0AAW7A9V7
Organism   Vibrio alginolyticus strain 2439-01     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1629495..1640013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY47_RS15670 rimM 1629582..1630130 (-) 549 WP_005379964.1 ribosome maturation factor RimM -
  GPY47_RS15675 rpsP 1630160..1630408 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  GPY47_RS15680 ffh 1630618..1632000 (-) 1383 WP_005385423.1 signal recognition particle protein -
  GPY47_RS15685 - 1632225..1633019 (+) 795 WP_005379950.1 inner membrane protein YpjD -
  GPY47_RS15690 - 1633144..1634424 (+) 1281 WP_005379948.1 HlyC/CorC family transporter -
  GPY47_RS15695 luxS 1634495..1635013 (-) 519 WP_005379945.1 S-ribosylhomocysteine lyase Regulator
  GPY47_RS15700 - 1635098..1635703 (-) 606 WP_005379943.1 hypothetical protein -
  GPY47_RS15705 gshA 1635727..1637295 (-) 1569 WP_025768181.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19132.87 Da        Isoelectric Point: 4.7221

>NTDB_id=408095 GPY47_RS15695 WP_005379945.1 1634495..1635013(-) (luxS) [Vibrio alginolyticus strain 2439-01]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNDDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLKEAQQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=408095 GPY47_RS15695 WP_005379945.1 1634495..1635013(-) (luxS) [Vibrio alginolyticus strain 2439-01]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGTATGAATGCACCCGCTGTACGAGTGGCGAAAACCATGCAGAC
CCCAAAAGGGGATACGATTACTGTTTTCGACTTACGCTTTACTGCGCCAAACAAAGACATTCTTTCTGAAAAAGGTATTC
ACACCCTAGAGCACCTTTATGCAGGCTTTATGCGTAATCACCTAAACGATGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACAGGTTTTTACATGAGCCTGATTGGCACACCATCAGAGCAGCAAGTCGCAGATGCTTGGATTGCAGC
AATGGAAGATGTGCTGAAGGTAGAAAGTCAGAATAAGATCCCTGAACTTAACGAATACCAATGCGGCACGGCAGCAATGC
ACTCTTTAAAAGAAGCACAACAGATCGCAAAGAACATTTTGGATGCTGGTGTTTCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAGTCGATGTTAAAAGAGTTGCGCATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment