Detailed information NTG0408085

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GPY47_RS09620
• Genome accession: NZ_CP046806
• Coordinates: 330742..332163 (-)
• Length: 473 a.a.
• NCBI ID: WP_053306939.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain 2439-01
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 325742..337163

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY47_RS09595	-	326272..326922 (+)	651	WP_021707633.1	thiopurine S-methyltransferase	-
GPY47_RS09600	purT	326995..328170 (-)	1176	WP_033905149.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
GPY47_RS09605	cdd	328314..329201 (-)	888	WP_005377892.1	cytidine deaminase	-
GPY47_RS09610	-	329633..330310 (-)	678	WP_005377888.1	LrgB family protein	-
GPY47_RS09615	-	330312..330686 (-)	375	WP_005397786.1	CidA/LrgA family protein	-
GPY47_RS09620	sbcB	330742..332163 (-)	1422	WP_053306939.1	exodeoxyribonuclease I	Machinery gene
GPY47_RS09625	-	332321..333694 (-)	1374	WP_005377885.1	L-cystine transporter	-
GPY47_RS09630	-	333895..334584 (-)	690	WP_005377884.1	NAD(P)H-binding protein	-
GPY47_RS09635	cobT	334833..335876 (+)	1044	WP_005377883.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
GPY47_RS09640	-	335876..336682 (+)	807	WP_054576446.1	adenosylcobinamide-GDP ribazoletransferase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54529.71 Da
• Isoelectric Point: 4.8214

>NTDB_id=408085 GPY47_RS09620 WP_053306939.1 330742..332163(-) (sbcB) [Vibrio alginolyticus strain 2439-01]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHTELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=408085 GPY47_RS09620 WP_053306939.1 330742..332163(-) (sbcB) [Vibrio alginolyticus strain 2439-01]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCGGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACACTGAACTCGCGAGACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCACGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAACATAGTAACGCGCACGATGCCATGGCAGATGTGATTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGTCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCTGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACTAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCGGAAAACGCAGAAAAC
ATCGGCATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAACGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGACGGATTCTTCTCTCCGGCCG
ATCGCGCAGCCATGGATATCATTCGGGAAACCGACCCGAACAATCTTGCCGCATTGGACATTGAATTTGATGACAAGCGC
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCATT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCTTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.07	100	0.791