Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GPX92_RS14860 Genome accession   NZ_CP046802
Coordinates   2248740..2250161 (-) Length   473 a.a.
NCBI ID   WP_158117310.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 2070-81     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2243740..2255161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX92_RS14840 - 2243816..2246515 (+) 2700 WP_158117309.1 EAL domain-containing protein -
  GPX92_RS14845 cdd 2246600..2247487 (-) 888 WP_078924772.1 cytidine deaminase -
  GPX92_RS14850 - 2247646..2248326 (-) 681 WP_154115545.1 CidB/LrgB family autolysis modulator -
  GPX92_RS14855 - 2248326..2248709 (-) 384 WP_115173989.1 CidA/LrgA family protein -
  GPX92_RS14860 sbcB 2248740..2250161 (-) 1422 WP_158117310.1 exodeoxyribonuclease I Machinery gene
  GPX92_RS14865 - 2250319..2251689 (-) 1371 WP_078924769.1 L-cystine transporter -
  GPX92_RS14870 - 2251856..2252545 (-) 690 WP_158117311.1 NAD(P)H-binding protein -
  GPX92_RS14875 cobT 2252706..2253770 (+) 1065 WP_158117312.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  GPX92_RS14880 - 2253770..2254582 (+) 813 WP_158117313.1 adenosylcobinamide-GDP ribazoletransferase -
  GPX92_RS14885 cobU 2254567..2255115 (+) 549 WP_158117314.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54435.14 Da        Isoelectric Point: 5.4541

>NTDB_id=408070 GPX92_RS14860 WP_158117310.1 2248740..2250161(-) (sbcB) [Vibrio cincinnatiensis strain 2070-81]
MQQHQPTFFFFDYETWGTNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPCDYLPGPEAALITKITPQKVMEEGLPEPE
FIARIHAELATPNTTSLGYNNIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGIHWPENNDGFTS
FKLEDLSKRNGIEHENAHDAMADVIATIELAKKIKAAQPKLFDYFLSMRHKRKLIDLVDIVNMTPLMHVSGMLGRECQYT
SWVVPVAWHPTNQNAVIVVDLAKDPEPLLTLSAEQLHQRLYTKREELAEDELPVPIKLVHLNKCPILAPAKTLTADNAAV
IGIDREQCLANLALLRQHPEIREKLVALFAIEREFPATADVDSQLYDGFFSPSDKAGMEIIRSSHPELLGSLDIQFSDPR
IAPLLFRYRARHYPWTLNDTEQRRWANHCRDYFETCLPSYMLSLENLVQEHQSDEKKMAILKSVYRYVESLAC

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=408070 GPX92_RS14860 WP_158117310.1 2248740..2250161(-) (sbcB) [Vibrio cincinnatiensis strain 2070-81]
ATGCAACAGCACCAGCCAACTTTCTTCTTTTTCGATTATGAGACGTGGGGAACGAATCCAGCGAAAGATCGACCCAGCCA
GTTTGCCGGTGTCCGTACTGATATGGATTTCAATATTATCGGTGAGCCGTTAGTGATTTACTGTCAATTACCTTGTGATT
ATCTACCGGGGCCGGAGGCTGCGTTAATCACCAAAATTACACCACAAAAGGTAATGGAGGAAGGGCTACCTGAGCCTGAA
TTTATTGCTCGAATTCACGCAGAACTCGCCACCCCCAATACAACTAGCCTAGGTTATAACAACATTCGTTTTGATGATGA
GGTGACTCGCTATACCTGTTATCGCAACTTTCTTGACCCTTATGCGTGGAGTTGGCAAAACGGTAACTCTCGCTGGGATC
TATTAGATGTAATGCGGGCCTGCCACGCACTACGTCCGGAAGGGATCCACTGGCCAGAAAATAACGATGGGTTTACCAGC
TTTAAATTAGAAGACCTATCAAAAAGAAACGGCATTGAACATGAAAATGCCCACGATGCAATGGCCGATGTCATCGCTAC
TATTGAACTTGCAAAAAAAATCAAAGCCGCCCAGCCTAAGCTTTTCGATTATTTTTTATCAATGCGCCATAAACGCAAGC
TGATCGACCTGGTCGATATTGTCAATATGACACCGTTAATGCATGTTTCTGGCATGTTGGGTCGAGAATGCCAATACACC
AGTTGGGTTGTTCCAGTGGCGTGGCATCCTACCAACCAGAATGCTGTTATTGTGGTCGATTTAGCCAAAGATCCTGAGCC
GTTGTTAACGCTCTCTGCCGAGCAGTTGCATCAACGTCTTTACACCAAACGTGAGGAATTGGCTGAAGATGAATTACCAG
TGCCCATCAAATTGGTACATCTCAATAAGTGTCCGATTTTAGCGCCTGCAAAAACCTTAACCGCAGACAATGCCGCCGTG
ATCGGGATTGACCGTGAACAATGCTTAGCGAATCTCGCCTTACTTCGTCAGCATCCAGAAATTCGAGAAAAATTAGTTGC
CCTATTTGCGATTGAACGAGAGTTTCCCGCCACAGCTGATGTCGATAGCCAACTGTATGATGGATTCTTTTCCCCGTCCG
ACAAAGCCGGTATGGAAATTATACGCTCAAGCCATCCTGAATTACTCGGCAGCTTAGATATTCAATTTAGTGACCCAAGA
ATAGCTCCACTGCTCTTTCGATATCGCGCTCGTCATTATCCTTGGACACTGAATGACACAGAGCAACGTCGCTGGGCTAA
TCACTGTCGAGATTATTTTGAAACATGCCTACCCAGCTATATGCTTAGTTTAGAAAACTTAGTGCAAGAGCACCAAAGTG
ATGAGAAAAAAATGGCCATACTCAAATCTGTTTATCGCTATGTAGAATCTTTAGCTTGCTAG

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(10-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(209-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

81.356

99.789

0.812

Multiple sequence alignment