Detailed information NTG0408068

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: GPX92_RS11365
• Genome accession: NZ_CP046802
• Coordinates: 1512178..1515567 (-)
• Length: 1129 a.a.
• NCBI ID: WP_078926078.1
• Uniprot ID: -
• Organism: Vibrio cincinnatiensis strain 2070-81
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 1507178..1520567

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPX92_RS11350	-	1507564..1508589 (-)	1026	WP_158117135.1	ABC transporter permease	-
GPX92_RS11355	-	1508592..1509578 (-)	987	WP_078926076.1	ABC transporter permease	-
GPX92_RS11360	-	1509738..1511408 (-)	1671	WP_154115298.1	ABC transporter substrate-binding protein	-
GPX92_RS11365	chiS	1512178..1515567 (-)	3390	WP_078926078.1	response regulator	Regulator
GPX92_RS11370	rsmC	1515766..1516791 (-)	1026	WP_078926079.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
GPX92_RS11375	-	1516857..1517942 (-)	1086	WP_158117136.1	AI-2E family transporter	-
GPX92_RS11380	hemL	1518256..1519548 (-)	1293	WP_158117137.1	glutamate-1-semialdehyde 2,1-aminomutase	-
GPX92_RS11385	erpA	1519920..1520261 (+)	342	WP_078926152.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 128239.19 Da
• Isoelectric Point: 6.4363

>NTDB_id=408068 GPX92_RS11365 WP_078926078.1 1512178..1515567(-) (chiS) [Vibrio cincinnatiensis strain 2070-81]
MFRFNRKQKFKRLQNTLMLAFLVLSLTPLTVTALFFLHSHSKDLQEQSTSHLLSVRDTKQQQVIDYLSAKESEVMGFVRS
ELAYASGGRFYGLVNAFQRLGDDIEQARLHAQQRYIPGSGDQIKTSVLPKSSSYVGSERYRLLHKRYHSAYLELLKRSDF
DDILLVDLNGNVVYSIYKYDNYGTNLLTGRYKSSNLGTTFQHLEQIVTENRKLNEDYTPVVLSDFIEEEGQQYAWMGAPI
IQQGYLHSYAMFRLPNNGITKLISENNSDSSKRTLLVGQDQRSRILAHNQVDIKTSTDVINMALNGGRAVGTYKNTLGEK
HIAAYAPIKVKELDWAIVVELPEKEAFARVRQLEKLFIFAMLTAIILVVIASHYLSNFITSPLLKLTWAAERVSAGDLDK
AIINTERQDEIGRLAVSFERMQRSIREKIQLIKSQNIELENNIQVIRKQNDELQLANKLKDEFLATTSHELRTPLHGMIG
IAEALISGANGPINGAHKYQLDIIISSGQRLANLVDDLLDYHKMRYGHLDMELRAVNLASATQLVLALSSHLLGKKQIRI
INQVAENPIWVCADAQRLEQVLYNLIGNAIKYTSEGKIVISATQQEDHVRVQVVDTGQGIPAEQLEHIFEPLIQAGHDSS
RYRQGAGLGLSISRQLIGLMDGSLYVSSQPMVGTTFSFTLPLATSEQIEHAQQTQMAHFQIPELTELEKDEENHLPENPD
GPLLLVADDEPVNLRVLKSFLRLEGYRVKTVQEGNEVLSSVKEEQPELLLLDIMMPGMNGYQICEQLRQDYDHAQLPIIM
LTALNQSDDRLKGFEVGANDYLSKPFNKQELAARIQAHLTASKAEQRRIENARLQKELKQRAMVEASLLETQGRLLEQLD
SAPEAILCLREDNKIRFANESAARLFKRSQEQLKRSDAEELIAPKYLLVEQEHYCGNIDIYVDDIRQHISADILRLPEGS
GFKAMYIFNVGGNINAARIHNLETALEALSSYAFEGDKDKLQQLKELGGEFTRIAEKVAGENQSKQELMRSVLVEAMSSA
LDYWEKVTGQSKFTFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLNSLDYILEHCKEQSPERTYIEVQRD
KLQKLLTTD

Nucleotide

• Length: 3390 bp

>NTDB_id=408068 GPX92_RS11365 WP_078926078.1 1512178..1515567(-) (chiS) [Vibrio cincinnatiensis strain 2070-81]
ATGTTCAGGTTTAATCGAAAACAGAAATTTAAACGTCTGCAAAATACGTTAATGTTGGCATTTTTAGTGCTTAGCCTTAC
CCCTCTCACTGTGACGGCGCTGTTTTTCCTTCATTCTCACAGCAAAGATTTACAGGAACAGAGCACTTCTCATCTGCTAT
CTGTACGCGATACCAAGCAACAACAAGTGATTGACTACCTAAGCGCGAAAGAATCTGAAGTGATGGGCTTTGTTCGTTCA
GAACTGGCTTATGCAAGTGGTGGGCGATTCTATGGCTTAGTCAACGCCTTTCAACGGTTAGGTGATGATATTGAGCAAGC
CCGCCTACATGCCCAACAACGCTATATCCCCGGATCCGGCGATCAAATCAAAACCTCTGTACTGCCTAAATCAAGCAGTT
ATGTGGGCAGTGAACGTTATCGCCTACTGCACAAACGCTACCATTCCGCTTATCTTGAACTTCTGAAACGCTCGGATTTC
GACGACATTTTATTGGTCGACCTCAATGGTAACGTGGTCTATTCCATTTACAAATATGACAATTATGGTACGAACCTACT
CACTGGGCGCTATAAAAGTTCGAACCTAGGAACCACATTTCAGCATTTAGAGCAAATCGTCACAGAAAATCGGAAGCTCA
ATGAAGATTATACCCCCGTCGTGTTATCCGATTTTATTGAAGAAGAGGGGCAGCAATACGCTTGGATGGGTGCCCCCATT
ATTCAACAAGGCTACCTACACAGTTATGCTATGTTTCGGCTGCCAAATAATGGGATAACAAAACTCATTTCTGAAAATAA
CAGCGATTCCTCAAAACGCACATTGCTGGTCGGGCAGGATCAGCGATCACGAATCCTAGCTCATAACCAAGTCGATATAA
AAACCAGTACCGATGTCATCAATATGGCACTCAATGGCGGTCGAGCCGTTGGAACCTATAAAAATACCTTAGGCGAGAAA
CACATTGCCGCCTATGCCCCGATAAAAGTGAAAGAGTTAGACTGGGCTATAGTCGTAGAGCTACCAGAGAAAGAAGCCTT
TGCGCGAGTTCGTCAATTAGAGAAATTGTTTATTTTTGCAATGCTCACCGCCATAATCCTCGTCGTGATCGCCTCTCACT
ACCTATCTAACTTCATCACCTCTCCGTTATTGAAACTGACATGGGCGGCCGAACGGGTTTCAGCCGGAGATCTGGATAAA
GCCATCATTAATACTGAACGCCAAGATGAAATTGGCCGGTTGGCGGTGAGCTTTGAACGAATGCAACGTTCAATTCGAGA
AAAAATTCAACTGATCAAATCGCAAAACATTGAGTTAGAAAATAATATCCAAGTCATCCGTAAACAAAATGACGAATTAC
AGTTAGCCAATAAACTTAAAGATGAGTTTCTTGCTACCACTTCACATGAATTACGTACCCCACTACATGGCATGATTGGC
ATCGCGGAAGCATTGATTTCTGGGGCAAATGGTCCCATTAATGGCGCACACAAGTATCAATTAGATATTATCATCAGCAG
TGGGCAACGTTTGGCTAATTTGGTAGATGATCTATTGGATTACCATAAAATGCGTTATGGCCATTTAGATATGGAGTTAC
GTGCAGTCAACCTTGCAAGTGCAACTCAACTCGTCTTAGCGCTCTCTAGCCATCTATTGGGGAAAAAACAAATTCGAATT
ATTAATCAAGTCGCTGAAAACCCCATTTGGGTGTGTGCAGATGCTCAGCGTCTTGAACAAGTACTCTATAACCTTATCGG
TAATGCGATTAAATATACCTCTGAAGGAAAAATTGTCATTTCCGCCACTCAGCAAGAAGATCACGTTCGAGTGCAAGTTG
TTGATACGGGGCAAGGCATCCCCGCTGAGCAACTGGAACATATTTTTGAACCTCTTATTCAAGCTGGGCACGATAGTAGC
CGTTACCGTCAAGGCGCGGGATTAGGCCTATCCATTAGCCGCCAATTAATCGGATTAATGGATGGATCTTTATATGTCAG
CAGCCAACCAATGGTGGGGACCACCTTTAGCTTCACTCTCCCACTTGCGACATCAGAACAGATAGAGCATGCCCAACAAA
CCCAAATGGCACATTTCCAAATACCAGAGTTAACGGAACTAGAGAAAGATGAAGAAAATCATCTGCCAGAAAATCCTGAT
GGACCTCTTCTTCTGGTTGCCGATGATGAACCCGTCAATTTACGGGTTCTCAAAAGTTTTTTACGCTTAGAAGGTTATCG
GGTCAAAACCGTACAAGAAGGCAATGAAGTACTATCAAGTGTAAAAGAAGAACAGCCAGAACTATTACTGCTCGATATCA
TGATGCCAGGCATGAACGGTTATCAAATCTGCGAACAACTACGCCAAGATTACGACCACGCTCAACTGCCCATCATTATG
CTCACCGCACTAAACCAGAGTGATGACCGATTGAAAGGCTTTGAAGTCGGTGCTAATGATTACTTATCCAAACCTTTCAA
TAAACAAGAGTTAGCCGCTCGTATTCAAGCACATTTAACCGCAAGTAAAGCTGAACAACGACGAATAGAAAATGCTCGGT
TACAAAAAGAACTAAAACAACGCGCCATGGTAGAAGCCAGCCTGCTTGAAACCCAAGGGCGGCTGTTAGAACAACTAGAT
TCCGCTCCCGAGGCCATTTTATGCCTTCGAGAAGATAATAAAATTCGCTTTGCGAATGAGTCTGCCGCCCGACTATTTAA
GCGAAGCCAAGAGCAACTGAAACGCTCCGATGCTGAAGAACTGATTGCCCCCAAATATTTACTGGTCGAACAAGAACACT
ACTGTGGCAATATTGATATCTATGTCGATGATATCAGACAGCATATTTCGGCCGACATCCTTCGACTTCCTGAAGGATCT
GGCTTTAAAGCTATGTACATCTTTAATGTCGGAGGCAATATTAATGCAGCCAGAATCCATAACCTAGAAACGGCACTAGA
AGCTTTATCCAGTTATGCCTTTGAAGGAGATAAAGACAAACTTCAGCAATTAAAAGAATTAGGAGGAGAATTTACTCGTA
TTGCCGAAAAAGTAGCCGGAGAGAACCAATCAAAACAGGAATTAATGCGATCAGTATTGGTCGAAGCGATGAGTAGTGCT
CTTGATTACTGGGAAAAAGTGACAGGGCAAAGTAAATTCACGTTTGCTGAACAAAGTGGTTTATGGCGCGTCTATTTAGA
CCGTAGTACGCTGCAAACCCGTACATTGGATAAATACCTGCGAATTGAAACTCTGCCGAAGACTCCTCGTTGGCGTACCG
TACTAAATTCACTGGATTATATTCTCGAACATTGCAAAGAGCAGTCCCCAGAGCGAACCTATATTGAAGTACAAAGAGAT
AAACTTCAAAAGCTACTCACCACAGACTAA

Domains

Predicted by InterproScan.

• HAMP domain (HAMP) (375-427)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Response regulator receiver domain (Response_reg) (725-836)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	81.754	100	0.818