Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GPX92_RS09935 Genome accession   NZ_CP046802
Coordinates   1208352..1209359 (+) Length   335 a.a.
NCBI ID   WP_078927109.1    Uniprot ID   A0A1T4RQP9
Organism   Vibrio cincinnatiensis strain 2070-81     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1203352..1214359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX92_RS09915 metJ 1203488..1203805 (+) 318 WP_078927113.1 met regulon transcriptional regulator MetJ -
  GPX92_RS09920 - 1203868..1205145 (-) 1278 WP_078927112.1 malic enzyme-like NAD(P)-binding protein -
  GPX92_RS09925 rpmE 1205400..1205618 (-) 219 WP_078927111.1 50S ribosomal protein L31 -
  GPX92_RS09930 priA 1205862..1208063 (+) 2202 WP_154115177.1 primosomal protein N' -
  GPX92_RS09935 cytR 1208352..1209359 (+) 1008 WP_078927109.1 DNA-binding transcriptional regulator CytR Regulator
  GPX92_RS09940 - 1209485..1210027 (+) 543 WP_078927108.1 SPOR domain-containing protein -
  GPX92_RS09945 hslV 1210266..1210820 (+) 555 WP_078927107.1 ATP-dependent protease subunit HslV -
  GPX92_RS09950 hslU 1210859..1212190 (+) 1332 WP_078927106.1 HslU--HslV peptidase ATPase subunit -
  GPX92_RS09955 - 1212280..1213197 (+) 918 WP_078927105.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  GPX92_RS09960 rraA 1213273..1213788 (+) 516 WP_078927104.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36934.43 Da        Isoelectric Point: 6.3893

>NTDB_id=408056 GPX92_RS09935 WP_078927109.1 1208352..1209359(+) (cytR) [Vibrio cincinnatiensis strain 2070-81]
MATMKDVAQLAGVSTATVSRALMNPEKVSTSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYYTEIIRG
IEDAAMEHGYLVLLGDSGQQRKRESSFVNLVFTKQADGMLLLGADLPFDVSKSEQKNLPPMVMACEYAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRIAQISGPEGAVLCEFRQQGYQQALRRAGLTKNPSYHVVGDFTFDSGAKAVRQLLALSEPPTA
IFCHNDAMAIGAMQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
THLVVRESAAPPRIL

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=408056 GPX92_RS09935 WP_078927109.1 1208352..1209359(+) (cytR) [Vibrio cincinnatiensis strain 2070-81]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGTGTCTCCACCGCTACGGTATCTCGAGCGTTGATGAACCCAGAAAA
AGTCTCCACATCAACTCGTAAACGAGTGGAAGAGGCGGTTTTGGAAGCTGGCTATTCCCCTAATTCTTTAGCGCGTAATT
TGCGACGTAATGAATCCAAAACCATTGTGGCAATTGTTCCTGATATTTGCGATCCGTATTATACCGAGATCATCCGTGGC
ATTGAAGATGCCGCGATGGAACATGGTTACCTCGTATTATTGGGAGATAGTGGCCAACAGCGAAAAAGAGAAAGTTCCTT
TGTCAATTTGGTGTTCACCAAACAAGCGGACGGGATGTTATTGCTGGGGGCTGACTTACCTTTTGATGTCAGTAAATCAG
AACAAAAAAATCTGCCCCCCATGGTGATGGCATGTGAGTATGCTCCTGAACTTGAATTGCCGACGGTGCATATTGATAAC
CTGACCTCTGCGTTTGAAGCGGTTAACTATTTAACTCAAATGGGCCATAAACGTATCGCTCAGATCAGTGGTCCAGAAGG
GGCTGTTTTGTGTGAATTTCGTCAGCAAGGATATCAGCAGGCGTTACGTCGAGCTGGTTTGACAAAAAATCCTAGTTACC
ATGTGGTGGGGGATTTTACCTTTGATTCTGGTGCTAAAGCCGTTCGTCAGCTATTGGCTTTATCTGAGCCGCCGACCGCA
ATTTTCTGTCATAACGATGCAATGGCCATTGGTGCCATGCAAGAAGCCAAACGATTGGGGTTACGTGTTCCACAAGATTT
ATCGGTAGTGGGATTTGATGACATTCAGTTTGCCCAATATTGCGATCCACCGCTAACCACCATTTCACAGCCTCGTTATG
AGATTGGCCGTCAAGCCATGTTAATGATGTTAGAACTACTGCGTGGGCATGATGTGAGAGCAGGTTCTCGCTTGTTGGAA
ACGCATTTAGTTGTGAGAGAAAGTGCGGCACCACCAAGAATCTTATAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T4RQP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

91.566

99.104

0.907
  cytR Vibrio parahaemolyticus RIMD 2210633

89.189

99.403

0.887

Multiple sequence alignment