Detailed information NTG0408044

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GPX92_RS06580
• Genome accession: NZ_CP046802
• Coordinates: 491588..492577 (-)
• Length: 329 a.a.
• NCBI ID: WP_078927351.1
• Uniprot ID: A0A1T4S5F3
• Organism: Vibrio cincinnatiensis strain 2070-81
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 486588..497577

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPX92_RS06565	cysP	486611..487612 (-)	1002	WP_158116910.1	thiosulfate ABC transporter substrate-binding protein CysP	-
GPX92_RS06570	cysM	487828..488718 (+)	891	WP_158116911.1	cysteine synthase CysM	-
GPX92_RS06575	mutS	488942..491524 (+)	2583	WP_158116912.1	DNA mismatch repair protein MutS	-
GPX92_RS06580	rpoS	491588..492577 (-)	990	WP_078927351.1	RNA polymerase sigma factor RpoS	Regulator
GPX92_RS06585	nlpD	492644..493540 (-)	897	WP_420883055.1	murein hydrolase activator NlpD	-
GPX92_RS06590	-	493591..494217 (-)	627	WP_078927349.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GPX92_RS06595	surE	494222..494977 (-)	756	WP_078927348.1	5'/3'-nucleotidase SurE	-
GPX92_RS06600	truD	494970..496016 (-)	1047	WP_078927347.1	tRNA pseudouridine(13) synthase TruD	-
GPX92_RS06605	ispF	496061..496540 (-)	480	WP_078927346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GPX92_RS06610	ispD	496537..497238 (-)	702	WP_078927345.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GPX92_RS06615	ftsB	497238..497519 (-)	282	WP_078927364.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37758.63 Da
• Isoelectric Point: 4.5495

>NTDB_id=408044 GPX92_RS06580 WP_078927351.1 491588..492577(-) (rpoS) [Vibrio cincinnatiensis strain 2070-81]
MSISNTTVTKVEDFDFDPEVFNALESDSVIEQPPTHTNLREEYDASSKSLDATQMYLSEIGFSPLLTAEEEVLYARRALR
GDDAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQRLDHEPTAEEIAAELDKPVDDVNKMLRLNERISSVDTPIGGDGDKALLDILPDANNSD
PEFSIQDDDIRDSLVNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILLKQGLNME
ALFTIENDG

Nucleotide

• Length: 990 bp

>NTDB_id=408044 GPX92_RS06580 WP_078927351.1 491588..492577(-) (rpoS) [Vibrio cincinnatiensis strain 2070-81]
ATGAGTATCAGCAATACAACAGTAACTAAAGTCGAAGATTTTGATTTTGACCCCGAGGTTTTCAATGCTCTAGAGTCTGA
CTCTGTGATTGAACAGCCACCTACCCACACTAACCTCCGAGAAGAGTATGACGCATCAAGCAAAAGCTTAGATGCAACAC
AAATGTACCTAAGTGAAATCGGTTTTTCGCCTTTGCTGACGGCTGAAGAAGAAGTTCTCTACGCACGGCGAGCATTGCGG
GGCGATGATGCCGCTCGTAAACGTATGATTGAAAGTAACCTACGGTTAGTGGTGAAAATTTCCCGCCGCTACAGTAACCG
AGGGCTCGCTTTATTGGATTTAATTGAAGAAGGTAACTTAGGGTTAATCCGAGCGGTAGAAAAATTTGATCCGGAACGTG
GTTTCCGTTTTTCAACCTATGCGACTTGGTGGATTCGGCAAACGATAGAACGTGCATTGATGAACCAAACTCGTACGATC
CGTCTACCCATTCATGTGGTTAAAGAGCTGAATATTTACTTACGTACAGCACGTGAACTTTCCCAACGATTGGATCATGA
ACCGACCGCAGAAGAAATTGCGGCAGAACTGGATAAACCCGTGGATGATGTCAATAAAATGCTGCGCTTAAATGAACGTA
TTAGTTCGGTAGACACCCCCATTGGTGGGGATGGAGACAAAGCGTTGCTGGATATTTTACCGGATGCAAATAATTCTGAT
CCTGAATTTTCGATACAAGATGATGATATTAGAGATTCGCTGGTTAACTGGCTAGATGAACTTAATCCGAAACAAAAAGA
GGTGCTTGCGCGGCGTTTCGGTTTACTGGGCTATGAACCATCAACTCTTGAAGAAGTTGGGAGAGAAATAAGCCTAACTC
GTGAGCGAGTGAGGCAGATCCAAGTTGAGGGGCTGCGCCGTTTACGCGAAATCTTACTCAAACAAGGGTTGAATATGGAA
GCTTTGTTTACTATTGAGAATGATGGATAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

3D structure

• AlphaFold DB: A0A1T4S5F3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	85.97	100	0.875