Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPX92_RS06440 Genome accession   NZ_CP046802
Coordinates   465371..465889 (-) Length   172 a.a.
NCBI ID   WP_154114811.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 2070-81     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 460371..470889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX92_RS06415 rimM 460519..461073 (-) 555 WP_078925564.1 ribosome maturation factor RimM -
  GPX92_RS06420 rpsP 461092..461340 (-) 249 WP_078925563.1 30S ribosomal protein S16 -
  GPX92_RS06425 ffh 461596..462972 (-) 1377 WP_078925562.1 signal recognition particle protein -
  GPX92_RS06430 - 463184..463978 (+) 795 WP_078925561.1 cytochrome C assembly family protein -
  GPX92_RS06435 - 464027..465304 (+) 1278 WP_078925560.1 HlyC/CorC family transporter -
  GPX92_RS06440 luxS 465371..465889 (-) 519 WP_154114811.1 S-ribosylhomocysteine lyase Regulator
  GPX92_RS06445 gshA 466003..467571 (-) 1569 WP_158116902.1 glutamate--cysteine ligase -
  GPX92_RS06450 - 467792..470643 (-) 2852 Protein_402 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19066.94 Da        Isoelectric Point: 5.2188

>NTDB_id=408041 GPX92_RS06440 WP_154114811.1 465371..465889(-) (luxS) [Vibrio cincinnatiensis strain 2070-81]
MPLLDSFTVDHTRMQAPAVRVAKTMQTPKGDTITVFDLRFTLPNKAILSEKGIHTLEHLYAGFMRDHLNSDIVEIIDISP
MGCRTGFYMSLIGTPSEEQVAHAWLAAMNDVLKVESQDKIPELNEYQCGTAAMHSLSEAKAIAQQVIQSGIRVNKNDELA
LPEAMLQSLKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=408041 GPX92_RS06440 WP_154114811.1 465371..465889(-) (luxS) [Vibrio cincinnatiensis strain 2070-81]
ATGCCATTACTAGACAGTTTTACGGTTGACCATACTCGTATGCAGGCTCCTGCAGTGCGAGTAGCTAAGACAATGCAAAC
CCCCAAAGGTGATACGATTACGGTGTTTGATTTACGTTTTACGTTACCCAATAAAGCGATTTTATCTGAAAAAGGGATTC
ACACGCTGGAGCATTTATATGCCGGATTCATGCGCGACCACCTCAATAGCGATATTGTAGAAATTATTGATATTTCTCCA
ATGGGGTGCCGAACGGGTTTTTATATGAGCTTAATTGGTACACCGAGTGAAGAGCAGGTTGCCCATGCCTGGCTCGCCGC
AATGAATGATGTGCTTAAGGTGGAAAGCCAAGATAAGATTCCTGAGTTAAATGAGTACCAATGTGGCACGGCCGCTATGC
ATTCTTTATCGGAAGCAAAAGCGATTGCCCAACAAGTTATTCAGTCTGGGATTCGAGTGAATAAAAATGACGAGTTGGCT
CTACCTGAAGCTATGCTTCAGTCATTAAAAGTCGATTGA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.38

99.419

0.849

Multiple sequence alignment