Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GPY18_RS16140 Genome accession   NZ_CP046800
Coordinates   1962068..1963075 (+) Length   335 a.a.
NCBI ID   WP_020429332.1    Uniprot ID   A0AAX2LJL2
Organism   Vibrio fluvialis strain 2012V-1235     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1957068..1968075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY18_RS16120 metJ 1957216..1957533 (+) 318 WP_020329393.1 met regulon transcriptional regulator MetJ -
  GPY18_RS16125 - 1957609..1958886 (-) 1278 WP_024373675.1 malic enzyme-like NAD(P)-binding protein -
  GPY18_RS16130 rpmE 1959098..1959316 (-) 219 WP_020329395.1 50S ribosomal protein L31 -
  GPY18_RS16135 priA 1959562..1961763 (+) 2202 WP_158147067.1 primosomal protein N' -
  GPY18_RS16140 cytR 1962068..1963075 (+) 1008 WP_020429332.1 DNA-binding transcriptional regulator CytR Regulator
  GPY18_RS16145 ftsN 1963205..1963762 (+) 558 WP_024373673.1 cell division protein FtsN -
  GPY18_RS16150 hslV 1963898..1964452 (+) 555 WP_020329399.1 ATP-dependent protease subunit HslV -
  GPY18_RS16155 hslU 1964494..1965825 (+) 1332 WP_158147068.1 HslU--HslV peptidase ATPase subunit -
  GPY18_RS16160 - 1965914..1966831 (+) 918 WP_020329401.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  GPY18_RS16165 rraA 1966907..1967434 (+) 528 WP_020329402.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36914.45 Da        Isoelectric Point: 6.3516

>NTDB_id=408017 GPY18_RS16140 WP_020429332.1 1962068..1963075(+) (cytR) [Vibrio fluvialis strain 2012V-1235]
MATMKDVAQLAGVSTATVSRALMNPEKVSASTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYYTEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRVAQIAGPEAAVLCQFRQQGYQQALRRAGITRNPTYSMSGDFTFESGAKAVRQLLALPEPPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TQLVVRESAAPPRSM

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=408017 GPY18_RS16140 WP_020429332.1 1962068..1963075(+) (cytR) [Vibrio fluvialis strain 2012V-1235]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGCGTTTCGACGGCGACGGTCTCGCGCGCTCTGATGAATCCCGAAAA
AGTTTCAGCCTCAACCCGTAAGCGGGTCGAGGAGGCAGTTTTAGAAGCTGGCTATTCACCGAATTCTTTGGCCCGAAATC
TGCGCCGCAATGAGTCAAAAACCATTGTCGCGATAGTGCCGGACATCTGTGACCCTTATTACACAGAGATCATTCGTGGT
ATCGAAGATGCTGCAATGGAACACGGTTATCTGGTGCTGCTGGGCGACAGCGGACAGCAGAAAAAACGTGAAAGCTCATT
TGTGAACCTGGTGTTTACCAAACAAGCGGACGGCATGTTACTGCTGGGGACTGACTTGCCGTTTGATGTGAGCAAACCCG
AGCAGAAAAACCTGCCACCGATGGTGATGGCGTGTGAGTTTGCGCCGGAGCTTGAGCTACCTACGGTACACATTGATAAC
CTGACATCGGCGTTTGAAGCCGTGAACTATCTGACTCAGATGGGGCACAAACGTGTGGCACAAATCGCCGGACCGGAAGC
CGCGGTGCTGTGTCAGTTCCGTCAGCAAGGTTATCAGCAGGCGCTGCGTCGTGCGGGTATCACTCGCAATCCGACCTACA
GTATGAGTGGTGACTTTACTTTTGAGTCCGGAGCCAAAGCGGTGCGTCAATTATTGGCCCTGCCTGAGCCACCAACGGCT
ATCTTCTGTCACAACGATACCATGGCGATTGGCGCGATTCAGGAAGCGAAACGTCTGGGACTGCGCGTACCGCAGGATCT
CTCTGTGGTGGGCTTTGATGACATTCAATTCGCCCAGTACTGCGATCCACCGCTGACGACCATCTCTCAGCCTCGCTACG
AGATTGGCCGTCAGGCGATGCTGATGATGCTGGAATTGCTGCGTGGTCATGACGTGCGTGCCGGCTCACGTTTGCTGGAA
ACTCAGCTGGTGGTGCGTGAGAGTGCAGCGCCGCCTCGTTCGATGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

94.277

99.104

0.934
  cytR Vibrio parahaemolyticus RIMD 2210633

90.691

99.403

0.901

Multiple sequence alignment