Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY18_RS12645 Genome accession   NZ_CP046800
Coordinates   1239653..1240171 (-) Length   172 a.a.
NCBI ID   WP_020330449.1    Uniprot ID   S7I1E9
Organism   Vibrio fluvialis strain 2012V-1235     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1234653..1245171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY18_RS12620 rimM 1234775..1235329 (-) 555 WP_020330455.1 ribosome maturation factor RimM -
  GPY18_RS12625 rpsP 1235357..1235605 (-) 249 WP_020330454.1 30S ribosomal protein S16 -
  GPY18_RS12630 ffh 1235831..1237213 (-) 1383 WP_020330453.1 signal recognition particle protein -
  GPY18_RS12635 - 1237426..1238220 (+) 795 WP_158146854.1 inner membrane protein YpjD -
  GPY18_RS12640 - 1238310..1239584 (+) 1275 WP_020330450.1 HlyC/CorC family transporter -
  GPY18_RS12645 luxS 1239653..1240171 (-) 519 WP_020330449.1 S-ribosylhomocysteine lyase Regulator
  GPY18_RS12650 - 1240197..1240799 (-) 603 WP_158124314.1 hypothetical protein -
  GPY18_RS12655 gshA 1240801..1242366 (-) 1566 WP_047456939.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18909.87 Da        Isoelectric Point: 5.5627

>NTDB_id=408001 GPY18_RS12645 WP_020330449.1 1239653..1240171(-) (luxS) [Vibrio fluvialis strain 2012V-1235]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSEKGIHTLEHLYAGFMRAHLNGANVEIIDISP
MGCRTGFYMSLIGAPSEEQVAAAWLAAMQDVLKVESQDKIPELNEYQCGTAAMHSLTEAKAIAEKVIAAGIQVNKNDELA
LPESMLKELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=408001 GPY18_RS12645 WP_020330449.1 1239653..1240171(-) (luxS) [Vibrio fluvialis strain 2012V-1235]
ATGCCATTATTAGACAGTTTTACCGTCGATCACACTCGCATGAACGCACCGGCTGTGCGTGTTGCGAAAACCATGCAGAC
GCCAAAAGGCGACACTATTACAGTGTTTGACCTGCGTTTTACGATGCCAAACAAAGACATTCTGTCAGAGAAAGGGATTC
ACACTCTTGAGCATCTTTACGCGGGCTTTATGCGCGCGCATCTGAACGGTGCGAACGTGGAAATCATCGATATTTCCCCA
ATGGGCTGCCGTACAGGTTTTTACATGAGCCTGATTGGTGCGCCAAGTGAAGAACAGGTGGCTGCCGCCTGGTTGGCTGC
GATGCAAGATGTTCTGAAGGTGGAAAGTCAGGACAAGATTCCTGAGCTGAACGAATACCAGTGTGGTACGGCAGCGATGC
ACTCGCTGACGGAAGCTAAAGCGATTGCAGAGAAAGTGATTGCCGCAGGCATTCAGGTCAACAAGAATGATGAACTGGCA
CTGCCAGAGTCAATGTTGAAAGAGCTGAAAGTACACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7I1E9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

91.279

100

0.913

Multiple sequence alignment