Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   GPY18_RS10830 Genome accession   NZ_CP046800
Coordinates   839401..840762 (-) Length   453 a.a.
NCBI ID   WP_024373970.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2012V-1235     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 834401..845762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY18_RS10795 moaE 835105..835560 (-) 456 WP_020327922.1 molybdopterin synthase catalytic subunit MoaE -
  GPY18_RS10800 moaD 835562..835807 (-) 246 WP_024373869.1 molybdopterin synthase sulfur carrier subunit -
  GPY18_RS10805 moaC 835804..836283 (-) 480 WP_158146762.1 cyclic pyranopterin monophosphate synthase MoaC -
  GPY18_RS10810 moaB 836293..836805 (-) 513 WP_020327925.1 molybdenum cofactor biosynthesis protein B -
  GPY18_RS10815 moaA 836877..837866 (-) 990 WP_038127045.1 GTP 3',8-cyclase MoaA -
  GPY18_RS10820 - 838177..839067 (+) 891 WP_158146763.1 YvcK family protein -
  GPY18_RS10825 luxU 839056..839394 (-) 339 WP_020327928.1 quorum-sensing phosphorelay protein LuxU -
  GPY18_RS10830 luxO 839401..840762 (-) 1362 WP_024373970.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  GPY18_RS10835 uvrB 841049..843079 (-) 2031 WP_158142281.1 excinuclease ABC subunit UvrB -
  GPY18_RS10845 rsxA 843969..844550 (+) 582 WP_004726646.1 electron transport complex subunit RsxA -
  GPY18_RS10850 rsxB 844550..845149 (+) 600 WP_020327943.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50275.49 Da        Isoelectric Point: 5.5480

>NTDB_id=407998 GPY18_RS10830 WP_024373970.1 839401..840762(-) (luxO) [Vibrio fluvialis strain 2012V-1235]
MVEDTASVAALYRSYLTPLEIDINIVGTGREAIESIAHREPDLILLDLRLPDMTGMDVLHAVKQRSPDVPVIFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEADNPGNQNYQGFIGSSQTMLAVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLG
YMSKEEGKGFVRLAPEVVERFKQYEWPGNVRQLQNVLRNVVVLNEGREITLNMLPPPLNQPSESIISVPKASAAPVSVHE
IFPLWMTEKQAIEKAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNEKVQEKEK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=407998 GPY18_RS10830 WP_024373970.1 839401..840762(-) (luxO) [Vibrio fluvialis strain 2012V-1235]
ATGGTCGAAGATACGGCGTCAGTGGCGGCGTTATATCGCTCGTACCTGACTCCGCTAGAGATCGATATCAACATCGTCGG
AACTGGGCGTGAAGCGATCGAAAGTATCGCGCATCGCGAACCGGATCTCATTCTACTCGATCTGCGCCTGCCGGACATGA
CCGGTATGGACGTATTACACGCTGTTAAACAGCGCTCGCCGGATGTACCTGTGATTTTTATGACCGCACATGGTTCAATT
GATACTGCGGTAGAGGCGATGCGTCATGGCGCACAGGATTTCCTCATCAAACCGTGTGAAGCAGACCGCTTACGTGTCAC
GGTAAACAATGCGATTCGTAAAGCCAGCAAGCTGAAGAATGAAGCTGACAATCCAGGTAACCAGAATTACCAAGGCTTTA
TCGGCAGTAGTCAAACCATGCTTGCGGTTTATCGCACCATTGACTCTGCGGCCAGCAGTAAGGCAAGTATCTTCATTACT
GGAGAAAGCGGTACGGGTAAAGAGGTGTGCGCGGAAGCGATTCACGCCGCCAGTCGACGCGGCGACAAACCGTTCATCGC
GATTAACTGTGCCGCGATTCCTAAAGATCTGATTGAAAGTGAATTGTTTGGTCATGTTAAAGGCGCATTTACTGGCGCAG
CAACGGATCGCCAGGGCGCTGCAGAATTGGCCGACGGCGGCACTCTGTTCCTCGATGAGCTGTGCGAAATGGATCTCGAT
CTGCAGACTAAATTGTTGCGCTTTATTCAGACCGGCACCTTCCAGAAAGTCGGCTCGTCAAAAATGAAAAGTGTGGATGT
GCGTTTTGTCTGCGCGACCAACCGTGACCCATGGAAAGAAGTGCAGGAAGGCCGTTTCCGTGAAGATTTGTACTACCGTC
TGTACGTCATTCCACTGCATCTGCCGCCTTTACGTGAGCGTGGCGATGATGTGATTGAAATTGCCTATTCGCTGCTGGGC
TATATGTCGAAAGAAGAGGGCAAAGGATTTGTCCGTCTCGCTCCGGAAGTCGTAGAACGTTTTAAACAATACGAATGGCC
AGGTAATGTGCGTCAGCTGCAGAACGTACTGCGCAACGTTGTGGTGCTGAATGAAGGGCGTGAAATCACCCTGAATATGC
TGCCACCACCGCTCAATCAGCCAAGCGAAAGCATCATCAGTGTACCGAAGGCTAGTGCCGCGCCCGTATCGGTTCACGAA
ATCTTCCCGCTGTGGATGACGGAAAAGCAAGCCATTGAGAAAGCGATTGAAGCCTGCGATGGCAATATTCCGCGTGCTGC
CGGCTATCTGGACGTCAGCCCATCCACTATTTATCGCAAACTGCAAACCTGGAACGAGAAGGTGCAGGAAAAGGAAAAGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

91.48

98.455

0.901

Multiple sequence alignment