Detailed information NTG0407990

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GPY18_RS09130
• Genome accession: NZ_CP046800
• Coordinates: 467183..468607 (+)
• Length: 474 a.a.
• NCBI ID: WP_158146652.1
• Uniprot ID: -
• Organism: Vibrio fluvialis strain 2012V-1235
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 462183..473607

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY18_RS09105	cobT	462353..463381 (-)	1029	WP_158146650.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
GPY18_RS09110	-	463395..464006 (-)	612	WP_154184500.1	flavin reductase family protein	-
GPY18_RS09115	-	464391..465074 (+)	684	WP_158146651.1	NAD(P)H-binding protein	-
GPY18_RS09120	-	465275..466654 (+)	1380	WP_020432565.1	L-cystine transporter	-
GPY18_RS09125	-	466733..466945 (-)	213	WP_038127137.1	hypothetical protein	-
GPY18_RS09130	sbcB	467183..468607 (+)	1425	WP_158146652.1	exodeoxyribonuclease I	Machinery gene
GPY18_RS09135	-	468648..469022 (+)	375	WP_020327588.1	CidA/LrgA family protein	-
GPY18_RS09140	-	469013..469693 (+)	681	WP_020327589.1	LrgB family protein	-
GPY18_RS09145	cdd	469895..470782 (+)	888	WP_020432570.1	cytidine deaminase	-
GPY18_RS09150	-	470829..473531 (-)	2703	WP_158146653.1	EAL domain-containing protein	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54474.91 Da
• Isoelectric Point: 5.1517

>NTDB_id=407990 GPY18_RS09130 WP_158146652.1 467183..468607(+) (sbcB) [Vibrio fluvialis strain 2012V-1235]
MQQQHQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPADYLPAPEAALITGIIPQKAMAQGLSEP
EFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGIVWPENDEGFT
SFKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPSNQNAVIVADLAKDPQPLIDLDVDALHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAA
TIGIDRELCLANLARIRQHPEIREKLAVLFSIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTKPELLGELDITFSDK
RIEPLLFRYRARNFPWTLDENDQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=407990 GPY18_RS09130 WP_158146652.1 467183..468607(+) (sbcB) [Vibrio fluvialis strain 2012V-1235]
ATGCAGCAGCAACACCAGCCAACTTATTTCTTCTTTGACTACGAGACGTGGGGCACCAGCCCGGCCAAAGATCGTCCGAG
TCAGTTTGCTGGTGTACGCACAGACATGGATTTCAACATCATTGGCGAGCCTTTGGTGATCTATTGCCAACTGCCAGCGG
ATTATCTGCCAGCGCCAGAAGCCGCGCTGATTACCGGCATCATTCCACAAAAAGCGATGGCACAAGGGCTTTCAGAGCCG
GAGTTTATTGCCAAAATTCACGCAGAACTGTCGACACCCAACACCACCAGCCTAGGTTACAACAGCATTCGTTTCGACGA
TGAAGTGACACGTTATACCTGCTACCGCAACTTTCTCGACCCGTATGCCTGGAGCTGGCAAAACGGCAACTCACGTTGGG
ATCTGCTCGATGTGATGCGTGCGTGTCATGCGCTGCGCCCGGAAGGCATTGTGTGGCCGGAAAACGACGAAGGCTTTACC
AGCTTCAAACTGGAGCATTTGTCCAAAGCCAACGGCATTGAACACGAAAATGCGCACGATGCGATGGCCGATGTGATTGC
AACCATTGAACTGGCGAAGAAAGTCAAAGCAGCACAGCCCAAACTGTTCGATTATTTCTTCTCTATGCGCCATAAGCGCA
AACTGAATGAACTGATTGATATCGTCAACATGACGCCGCTGATGCACGTGTCCGGCATGCTGGGTCGCGAGTGTCAATAC
ACCAGTTGGATTGTGCCGATAGCCTGGCACCCTTCCAATCAGAACGCCGTGATTGTGGCTGATTTGGCCAAAGATCCACA
GCCGCTGATCGATTTAGATGTGGACGCTCTGCATGCACGTTTATATACCCGTCACGATGACTTAGCACCGGACGAACTGC
CTGTGCCCGTCAAACTGGTCCATCTCAACAAATGCCCGATTCTGGCACCGGCGAAAACGCTGACCGCAGAAAATGCCGCT
ACCATCGGTATTGATCGCGAATTGTGTCTGGCGAATCTGGCTCGCATTCGTCAGCATCCTGAAATTCGAGAGAAGCTGGC
AGTCCTCTTTAGCATTGAACGAGAATTTGAAGCATCGAACGATGTTGATACACAGCTCTATGATGGATTCTTCTCACCTG
CGGATAAAGCGGCGATGGAGATCATCCGTTCAACCAAACCTGAGCTGCTTGGCGAGCTGGATATTACCTTCAGCGATAAA
CGCATCGAACCGCTGCTGTTTCGCTATCGCGCACGTAACTTCCCTTGGACGCTGGATGAAAATGACCAGCGCCGCTGGGC
GAACCATTGCCGTGACTACTACGAAACACACCTGCCAGATTACATGCTGAATCTGGAAAACTTAGTTCATGAACATGAAA
GTGACGAAAAGAAAATCGCCATTTTAAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCTTAG

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	83.51	99.789	0.833