Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY43_RS14720 Genome accession   NZ_CP046797
Coordinates   3148111..3148629 (+) Length   172 a.a.
NCBI ID   WP_014205765.1    Uniprot ID   A0A0Q2V091
Organism   Vibrio furnissii strain 2013V-1001     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3143111..3153629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY43_RS14710 gshA 3145913..3147478 (+) 1566 WP_158108068.1 glutamate--cysteine ligase -
  GPY43_RS14715 - 3147480..3148085 (+) 606 WP_158108069.1 hypothetical protein -
  GPY43_RS14720 luxS 3148111..3148629 (+) 519 WP_014205765.1 S-ribosylhomocysteine lyase Regulator
  GPY43_RS14725 - 3148720..3149994 (-) 1275 WP_004723872.1 HlyC/CorC family transporter -
  GPY43_RS14730 - 3150085..3150879 (-) 795 WP_004723874.1 inner membrane protein YpjD -
  GPY43_RS14735 ffh 3151092..3152471 (+) 1380 WP_004723876.1 signal recognition particle protein -
  GPY43_RS14740 rpsP 3152697..3152945 (+) 249 WP_004723879.1 30S ribosomal protein S16 -
  GPY43_RS14745 rimM 3152973..3153527 (+) 555 WP_004723882.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18856.59 Da        Isoelectric Point: 4.6766

>NTDB_id=407972 GPY43_RS14720 WP_014205765.1 3148111..3148629(+) (luxS) [Vibrio furnissii strain 2013V-1001]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSEKGIHTLEHLYAGFMRAHLNGANVEIIDISP
MGCRTGFYMSLIGAPSEEQVAAAWLASMQDVLSVESQDQIPELNEYQCGTAAMHSLNEAKAIAETVIAAGIQVNKNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=407972 GPY43_RS14720 WP_014205765.1 3148111..3148629(+) (luxS) [Vibrio furnissii strain 2013V-1001]
ATGCCATTATTAGACAGTTTTACCGTCGACCACACTCGCATGAACGCACCGGCTGTGCGTGTTGCGAAAACCATGCAAAC
GCCGAAAGGCGACACCATTACGGTGTTTGACCTGCGTTTCACCATGCCAAACAAAGACATTCTGTCCGAGAAAGGGATTC
ATACGCTGGAGCATCTGTACGCCGGCTTTATGCGTGCGCACCTCAATGGCGCGAACGTGGAAATTATCGACATCTCGCCG
ATGGGATGTCGCACCGGGTTTTACATGAGCCTGATTGGTGCGCCAAGCGAAGAGCAAGTCGCCGCCGCTTGGTTGGCGTC
GATGCAAGACGTATTGAGTGTCGAAAGTCAGGATCAAATTCCTGAGCTGAACGAATACCAGTGCGGCACCGCAGCGATGC
ACTCCCTGAATGAAGCCAAAGCGATTGCTGAAACCGTGATTGCCGCAGGCATTCAGGTCAACAAGAACGATGAACTGGCG
CTGCCCGAATCGATGCTCAATGAGCTGAAAGTGCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2V091

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

91.279

100

0.913

Multiple sequence alignment