Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GPY43_RS10720 Genome accession   NZ_CP046797
Coordinates   2311105..2312112 (-) Length   335 a.a.
NCBI ID   WP_004728525.1    Uniprot ID   -
Organism   Vibrio furnissii strain 2013V-1001     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2306105..2317112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY43_RS10695 rraA 2306737..2307273 (-) 537 WP_004728530.1 ribonuclease E activity regulator RraA -
  GPY43_RS10700 - 2307349..2308266 (-) 918 WP_014204315.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  GPY43_RS10705 hslU 2308360..2309691 (-) 1332 WP_004728528.1 HslU--HslV peptidase ATPase subunit -
  GPY43_RS10710 hslV 2309728..2310285 (-) 558 WP_014204312.1 ATP-dependent protease subunit HslV -
  GPY43_RS10715 - 2310424..2310975 (-) 552 WP_038152602.1 SPOR domain-containing protein -
  GPY43_RS10720 cytR 2311105..2312112 (-) 1008 WP_004728525.1 DNA-binding transcriptional regulator CytR Regulator
  GPY43_RS10725 priA 2312420..2314621 (-) 2202 WP_143680264.1 primosomal protein N' -
  GPY43_RS10730 rpmE 2314868..2315086 (+) 219 WP_004728523.1 50S ribosomal protein L31 -
  GPY43_RS10735 - 2315297..2316571 (+) 1275 WP_014204309.1 malic enzyme-like NAD(P)-binding protein -
  GPY43_RS10740 metJ 2316648..2316965 (-) 318 WP_004728521.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36886.40 Da        Isoelectric Point: 6.3510

>NTDB_id=407958 GPY43_RS10720 WP_004728525.1 2311105..2312112(-) (cytR) [Vibrio furnissii strain 2013V-1001]
MATMKDVAQLAGVSTATVSRALMNPEKVSASTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYYTEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRIAQIAGPEAAVLCQFRQQGYQQALRRAGISRNPTYSTIGDFTFESGAKAVRQLMALPEPPTA
IFCHNDTMAIGAIQEAKRLGMRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLD
TQLVIRESAAPPRSA

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=407958 GPY43_RS10720 WP_004728525.1 2311105..2312112(-) (cytR) [Vibrio furnissii strain 2013V-1001]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGCGTATCGACGGCGACAGTCTCGCGCGCTCTGATGAATCCCGAGAA
AGTTTCAGCCTCAACTCGTAAACGGGTTGAAGAGGCGGTTTTAGAAGCTGGCTATTCACCGAATTCTTTAGCCCGAAATC
TGCGTCGCAATGAATCGAAAACCATTGTCGCGATCGTGCCGGACATCTGTGATCCTTATTACACCGAAATTATTCGTGGT
ATCGAAGACGCCGCGATGGAACACGGTTATCTGGTACTGCTGGGTGACAGCGGTCAGCAGAAAAAACGTGAAAGCTCATT
TGTGAACTTGGTGTTTACCAAACAGGCGGACGGTATGCTATTGCTGGGGACCGATTTGCCGTTTGACGTGAGCAAACCTG
AGCAGAAAAACCTGCCACCGATGGTGATGGCGTGTGAGTTTGCGCCAGAACTTGAATTGCCGACGGTGCATATCGATAAC
CTGACATCTGCCTTTGAAGCGGTGAACTATCTGACGCAGATGGGGCACAAACGCATCGCGCAGATTGCCGGCCCTGAAGC
GGCGGTGTTGTGTCAATTCCGTCAGCAAGGGTATCAACAAGCCCTGCGCCGCGCGGGGATTTCACGCAATCCAACCTATA
GTACCATCGGTGACTTTACGTTTGAGTCGGGTGCCAAAGCGGTGCGCCAATTGATGGCCCTGCCAGAGCCGCCGACAGCC
ATTTTCTGTCACAACGATACCATGGCGATTGGTGCCATTCAGGAAGCCAAGCGTTTGGGCATGCGTGTGCCGCAAGACCT
GTCTGTGGTCGGCTTTGATGATATTCAGTTTGCGCAGTACTGCGATCCACCGCTAACCACCATTTCTCAGCCGCGTTACG
AGATCGGCCGTCAGGCGATGTTGATGATGCTTGAGTTACTGCGGGGTCATGATGTGCGTGCGGGCTCGCGTCTGCTCGAC
ACCCAATTGGTCATTCGCGAGAGTGCAGCGCCGCCCCGCTCGGCCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

93.373

99.104

0.925
  cytR Vibrio parahaemolyticus RIMD 2210633

90.149

100

0.901

Multiple sequence alignment