Detailed information NTG0407945

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GPY43_RS02970
• Genome accession: NZ_CP046797
• Coordinates: 652468..653889 (-)
• Length: 473 a.a.
• NCBI ID: WP_158107274.1
• Uniprot ID: -
• Organism: Vibrio furnissii strain 2013V-1001
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 647468..658889

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY43_RS23605	-	650098..650295 (+)	198	WP_199251473.1	hypothetical protein	-
GPY43_RS02955	cdd	650287..651173 (-)	887	Protein_584	cytidine deaminase	-
GPY43_RS02960	-	651382..652062 (-)	681	WP_014205225.1	LrgB family protein	-
GPY43_RS02965	-	652053..652427 (-)	375	WP_004726196.1	CidA/LrgA family protein	-
GPY43_RS02970	sbcB	652468..653889 (-)	1422	WP_158107274.1	exodeoxyribonuclease I	Machinery gene
GPY43_RS02975	-	654259..655140 (+)	882	WP_158107275.1	hypothetical protein	-
GPY43_RS02980	-	655215..656150 (-)	936	WP_158107276.1	sce7725 family protein	-
GPY43_RS02985	-	656116..657006 (-)	891	WP_242011016.1	sce7726 family protein	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54315.68 Da
• Isoelectric Point: 4.9468

>NTDB_id=407945 GPY43_RS02970 WP_158107274.1 652468..653889(-) (sbcB) [Vibrio furnissii strain 2013V-1001]
MQQQQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMEFNIIGEPLVIYCQLPSDYLPAPEAALITGIIPQKAMAQGLPEPE
FIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGVVWPENDEGFTS
FKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFEYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYT
SWIVPIAWHPTNQNAVIVVDLAKDPQPLLDLDVESLHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAAT
IGIDRELCLANLARIRQSPDIREKLAALFSIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTNPELLGELDITFSDKR
IEPQLFRYRARNFPWTLGDEEQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=407945 GPY43_RS02970 WP_158107274.1 652468..653889(-) (sbcB) [Vibrio furnissii strain 2013V-1001]
ATGCAGCAACAGCAGCCCACTTATTTTTTCTTTGACTATGAGACGTGGGGCACCAGCCCGGCCAAAGATCGTCCGAGTCA
GTTTGCTGGTGTGCGCACAGACATGGAGTTCAATATCATCGGTGAGCCATTGGTGATTTACTGCCAATTGCCATCGGATT
ACCTGCCGGCGCCAGAAGCCGCGCTGATTACTGGCATCATTCCGCAAAAAGCGATGGCGCAAGGGCTGCCTGAGCCCGAA
TTCATCGCCAAGATTCACGCCGAGTTATCGACACCAAACACCACAAGCCTTGGGTACAACAGCATTCGCTTTGACGATGA
AGTCACCCGTTACACCTGTTATCGCAACTTCCTTGATCCGTACGCTTGGAGCTGGCAAAACGGCAACTCCCGCTGGGATT
TACTGGATGTGATGCGTGCATGTCACGCGTTGCGCCCGGAAGGTGTGGTGTGGCCAGAAAACGACGAAGGGTTTACCAGC
TTTAAGCTGGAACATTTGTCAAAAGCCAACGGCATTGAGCACGAAAATGCGCACGATGCGATGGCCGATGTGATTGCGAC
GATTGAACTGGCGAAAAAAGTCAAAGCGGCGCAACCCAAGCTGTTTGAGTATTTCTTCTCGATGCGTCATAAACGCAAGC
TCAATGAGCTGATTGATATTGTCAACATGACGCCGCTGATGCATGTCTCTGGCATGCTGGGCCGTGAATGCCAATACACC
AGTTGGATTGTGCCGATTGCTTGGCACCCGACCAACCAAAACGCGGTCATTGTGGTGGATTTAGCCAAAGACCCGCAGCC
GCTGCTCGATTTGGATGTGGAATCACTGCACGCGCGTTTATACACTCGTCATGACGATTTAGCGCCGGATGAATTGCCTG
TGCCCGTCAAGCTGGTTCATCTCAACAAGTGTCCGATTCTGGCTCCAGCGAAAACGCTCACCGCCGAAAATGCCGCCACC
ATCGGCATCGACCGCGAACTGTGCTTGGCCAACTTGGCACGCATTCGTCAGTCTCCCGATATTCGCGAAAAACTGGCGGC
GCTGTTTAGTATTGAGCGCGAATTTGAAGCCTCGAATGATGTGGATACGCAGCTCTATGACGGGTTCTTCTCCCCTGCAG
ATAAAGCCGCGATGGAAATTATTCGTTCCACGAATCCTGAACTGCTCGGTGAGCTGGATATCACGTTCAGCGACAAACGC
ATTGAACCCCAGCTGTTTCGTTACCGCGCGCGCAACTTCCCGTGGACGCTCGGCGACGAAGAGCAACGCCGCTGGGCGAA
CCATTGTCGCGATTACTACGAAACACATCTGCCTGATTACATGCTGAACCTGGAAAATCTAGTGCATGAACATGAAAGTG
ATGAAAAGAAAATCGCGATTCTCAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCTTAG

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (209-469)

• Exonuclease (RNase_T) (10-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	83.227	99.577	0.829