Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GPY38_RS20390 Genome accession   NZ_CP046796
Coordinates   1065105..1066202 (+) Length   365 a.a.
NCBI ID   WP_004726763.1    Uniprot ID   A0A0Q2SGB9
Organism   Vibrio furnissii strain 2420-04     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1031143..1064685 1065105..1066202 flank 420


Gene organization within MGE regions


Location: 1031143..1066202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY38_RS20165 - 1031143..1033029 (-) 1887 WP_158141817.1 hypothetical protein -
  GPY38_RS23375 - 1033058..1033165 (-) 108 WP_075990070.1 GpE family phage tail protein -
  GPY38_RS20175 - 1033201..1033488 (-) 288 WP_004726847.1 phage tail assembly protein -
  GPY38_RS20180 gpM 1033472..1034179 (-) 708 WP_158141818.1 phage terminase small subunit -
  GPY38_RS20185 - 1034190..1034555 (-) 366 WP_004726844.1 phage tail tube protein -
  GPY38_RS20190 - 1034559..1035692 (-) 1134 WP_158141819.1 phage tail sheath subtilisin-like domain-containing protein -
  GPY38_RS20195 - 1035689..1035871 (-) 183 WP_055452432.1 DUF2635 domain-containing protein -
  GPY38_RS20200 - 1035872..1036408 (-) 537 WP_158141820.1 phage virion morphogenesis protein -
  GPY38_RS20205 - 1036405..1036869 (-) 465 WP_158141821.1 phage tail protein -
  GPY38_RS20210 - 1036869..1037318 (-) 450 WP_158141822.1 head completion/stabilization protein -
  GPY38_RS20215 - 1037427..1038464 (-) 1038 WP_158141823.1 phage major capsid protein, P2 family -
  GPY38_RS20220 - 1038507..1039319 (-) 813 WP_158141824.1 GPO family capsid scaffolding protein -
  GPY38_RS20225 - 1039454..1041214 (+) 1761 WP_199244911.1 terminase family protein -
  GPY38_RS20230 - 1041225..1042190 (+) 966 WP_158141826.1 phage portal protein -
  GPY38_RS20235 - 1042344..1043201 (-) 858 WP_158141827.1 hypothetical protein -
  GPY38_RS20240 - 1043614..1044231 (-) 618 WP_158141828.1 KilA-N domain-containing protein -
  GPY38_RS20245 - 1044839..1045141 (+) 303 WP_038151580.1 hypothetical protein -
  GPY38_RS20250 - 1045353..1045673 (+) 321 WP_158141829.1 hypothetical protein -
  GPY38_RS20255 - 1045757..1046008 (-) 252 WP_004726819.1 hypothetical protein -
  GPY38_RS20260 - 1045999..1046229 (-) 231 WP_004726817.1 hypothetical protein -
  GPY38_RS20265 - 1046240..1046656 (-) 417 WP_158141830.1 glycoside hydrolase family protein -
  GPY38_RS20270 - 1046800..1047276 (-) 477 WP_158141831.1 hypothetical protein -
  GPY38_RS23220 - 1047276..1048520 (-) 1245 WP_242009687.1 hypothetical protein -
  GPY38_RS20280 - 1048517..1048996 (-) 480 WP_158141832.1 hypothetical protein -
  GPY38_RS20285 - 1048978..1050024 (-) 1047 WP_158141833.1 baseplate J/gp47 family protein -
  GPY38_RS20290 - 1050021..1050407 (-) 387 WP_158108532.1 phage GP46 family protein -
  GPY38_RS20295 - 1050404..1050979 (-) 576 WP_158141834.1 phage baseplate assembly protein V -
  GPY38_RS20300 - 1050972..1051910 (-) 939 WP_158141835.1 phage tail protein -
  GPY38_RS20305 - 1051907..1053097 (-) 1191 WP_158141836.1 DNA circularization N-terminal domain-containing protein -
  GPY38_RS20315 - 1054488..1054739 (-) 252 WP_158141838.1 ogr/Delta-like zinc finger family protein -
  GPY38_RS20320 - 1054749..1057378 (-) 2630 Protein_956 replication endonuclease -
  GPY38_RS20325 - 1057375..1057602 (-) 228 WP_158141839.1 hypothetical protein -
  GPY38_RS20330 - 1057584..1057895 (-) 312 WP_158141840.1 hypothetical protein -
  GPY38_RS20335 - 1057968..1058300 (-) 333 WP_004726788.1 hypothetical protein -
  GPY38_RS20340 - 1058310..1058849 (-) 540 WP_004726786.1 phage regulatory CII family protein -
  GPY38_RS20345 - 1058907..1059365 (-) 459 WP_004726785.1 hypothetical protein -
  GPY38_RS20350 - 1059516..1060241 (+) 726 WP_199244912.1 S24 family peptidase -
  GPY38_RS20355 - 1060300..1060866 (-) 567 WP_158141841.1 hypothetical protein -
  GPY38_RS20360 - 1060965..1061555 (-) 591 WP_206752279.1 hypothetical protein -
  GPY38_RS20365 - 1061871..1062839 (+) 969 WP_158141843.1 tyrosine-type recombinase/integrase -
  GPY38_RS20370 - 1063001..1063318 (-) 318 WP_004726770.1 DUF496 family protein -
  GPY38_RS20375 - 1063508..1063705 (+) 198 WP_014257418.1 hypothetical protein -
  GPY38_RS20380 - 1063749..1064384 (+) 636 WP_158141844.1 YceH family protein -
  GPY38_RS20385 - 1064395..1064685 (+) 291 WP_004726765.1 GIY-YIG nuclease family protein -
  GPY38_RS20390 luxP 1065105..1066202 (+) 1098 WP_004726763.1 autoinducer 2-binding periplasmic protein LuxP Regulator

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41539.74 Da        Isoelectric Point: 5.2793

>NTDB_id=407933 GPY38_RS20390 WP_004726763.1 1065105..1066202(+) (luxP) [Vibrio furnissii strain 2420-04]
MKKTLFLSLLLGFTPFASSYSSQVLNGYWHYQEFLNANPQQKALTESLSDAVRQSSQRLTVKQQTPVTISVVYPGQQISD
YWVRNIKAFEMRLEELGIEYQINQVFTRPNQDTRQQSLSLMEAVKNNTDYLIFTLDTTRHRKFIEHVLNSSPTKLILQNI
TTPVRDWDERQPMMYVGFDHELGAQQLAQYYREHVPKGSKYSVLYFSEGYVSDARGDTFIQQMESTGDYQLASSYYTKAT
QESGYEATVNIVKNDPDIKFIYACSTDVALGAAKALQALKREDIQVNGWGGGSAELEALDEGHLDVTVMRINDDTGIAMA
EAIKRDLEGLAVPVVYSGDFEIVTKDDQPKKIGLFKQRAFRYSDR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=407933 GPY38_RS20390 WP_004726763.1 1065105..1066202(+) (luxP) [Vibrio furnissii strain 2420-04]
ATGAAGAAAACGCTTTTTCTTTCTCTTTTACTTGGTTTCACTCCTTTTGCCTCTTCGTATTCATCACAAGTGCTGAATGG
TTACTGGCATTATCAGGAATTTCTGAATGCCAATCCGCAACAAAAGGCACTGACTGAGTCGTTGTCTGATGCGGTGCGTC
AATCGTCTCAGCGGCTGACGGTAAAACAACAAACGCCGGTGACCATTTCGGTGGTTTATCCGGGGCAGCAGATCTCCGAT
TACTGGGTGCGCAACATCAAAGCGTTTGAAATGCGATTGGAAGAGTTAGGCATTGAATACCAGATTAATCAGGTGTTTAC
GCGCCCGAATCAAGACACTCGTCAACAAAGCTTGTCGTTGATGGAAGCGGTGAAGAACAATACGGATTATTTGATTTTCA
CGCTGGATACAACGCGCCACCGCAAGTTTATTGAACACGTTCTGAATTCGTCACCGACCAAATTGATTTTGCAGAATATC
ACCACGCCGGTTCGAGACTGGGATGAACGCCAGCCGATGATGTACGTTGGGTTTGACCATGAACTCGGTGCGCAGCAACT
CGCACAGTATTATCGCGAGCATGTGCCCAAAGGCAGCAAGTATTCGGTGCTGTATTTCTCTGAAGGGTACGTCAGCGATG
CGCGTGGCGACACTTTCATTCAGCAGATGGAAAGCACGGGCGATTACCAGCTGGCCTCGTCGTATTACACCAAAGCGACC
CAAGAAAGTGGCTATGAAGCCACCGTTAACATTGTCAAAAATGACCCGGATATTAAATTTATTTACGCCTGTTCCACCGA
TGTGGCACTGGGCGCAGCCAAGGCGCTACAAGCGTTAAAACGTGAAGATATTCAGGTAAATGGCTGGGGTGGTGGCTCGG
CAGAGCTAGAAGCCTTGGATGAAGGTCATCTTGATGTTACTGTCATGAGAATCAATGATGATACCGGCATTGCGATGGCG
GAAGCGATCAAACGTGATTTGGAAGGTTTGGCGGTGCCCGTGGTGTATTCCGGTGACTTTGAGATCGTGACCAAAGACGA
TCAGCCGAAAAAAATTGGTTTGTTTAAGCAACGCGCTTTTCGTTATTCCGACCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2SGB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

70.411

100

0.704

Multiple sequence alignment