Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GPY38_RS14965 Genome accession   NZ_CP046795
Coordinates   3223676..3224683 (+) Length   335 a.a.
NCBI ID   WP_004728525.1    Uniprot ID   -
Organism   Vibrio furnissii strain 2420-04     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3218676..3229683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY38_RS14945 metJ 3218823..3219140 (+) 318 WP_004728521.1 met regulon transcriptional regulator MetJ -
  GPY38_RS14950 - 3219217..3220491 (-) 1275 WP_004728522.1 malic enzyme-like NAD(P)-binding protein -
  GPY38_RS14955 rpmE 3220702..3220920 (-) 219 WP_004728523.1 50S ribosomal protein L31 -
  GPY38_RS14960 priA 3221167..3223368 (+) 2202 WP_158141354.1 primosomal protein N' -
  GPY38_RS14965 cytR 3223676..3224683 (+) 1008 WP_004728525.1 DNA-binding transcriptional regulator CytR Regulator
  GPY38_RS14970 - 3224813..3225364 (+) 552 WP_038152602.1 SPOR domain-containing protein -
  GPY38_RS14975 hslV 3225503..3226059 (+) 557 Protein_2881 ATP-dependent protease subunit HslV -
  GPY38_RS14980 hslU 3226096..3227427 (+) 1332 WP_158141355.1 HslU--HslV peptidase ATPase subunit -
  GPY38_RS14985 - 3227521..3228438 (+) 918 WP_014204315.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  GPY38_RS14990 rraA 3228514..3229044 (+) 531 WP_143680265.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36886.40 Da        Isoelectric Point: 6.3510

>NTDB_id=407923 GPY38_RS14965 WP_004728525.1 3223676..3224683(+) (cytR) [Vibrio furnissii strain 2420-04]
MATMKDVAQLAGVSTATVSRALMNPEKVSASTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYYTEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRIAQIAGPEAAVLCQFRQQGYQQALRRAGISRNPTYSTIGDFTFESGAKAVRQLMALPEPPTA
IFCHNDTMAIGAIQEAKRLGMRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLD
TQLVIRESAAPPRSA

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=407923 GPY38_RS14965 WP_004728525.1 3223676..3224683(+) (cytR) [Vibrio furnissii strain 2420-04]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGCGTATCGACGGCGACAGTCTCGCGCGCTCTGATGAATCCCGAGAA
AGTTTCAGCCTCAACCCGTAAACGGGTTGAAGAGGCGGTTTTAGAAGCTGGCTATTCACCGAATTCTTTAGCCCGAAATC
TGCGTCGCAATGAATCGAAAACCATTGTCGCGATCGTGCCGGACATCTGTGATCCTTATTACACCGAAATTATTCGTGGT
ATCGAAGACGCCGCGATGGAACACGGTTATCTGGTACTGCTGGGTGACAGCGGTCAGCAGAAAAAACGTGAAAGCTCATT
TGTGAACTTGGTGTTTACCAAACAGGCGGACGGTATGCTATTGCTGGGGACCGATTTGCCGTTTGACGTGAGCAAACCTG
AGCAGAAAAACCTGCCACCGATGGTGATGGCGTGTGAGTTTGCGCCAGAACTTGAATTGCCGACGGTGCATATCGATAAC
CTGACATCTGCCTTTGAAGCGGTGAACTATCTGACGCAGATGGGGCACAAACGCATCGCGCAGATTGCTGGCCCTGAAGC
GGCGGTGTTGTGTCAGTTCCGTCAGCAAGGGTATCAACAAGCCCTGCGCCGCGCGGGGATCTCACGCAATCCAACCTACA
GTACCATCGGTGACTTTACGTTTGAGTCGGGTGCCAAAGCGGTGCGCCAATTGATGGCCCTGCCAGAGCCGCCGACAGCC
ATTTTCTGTCACAACGATACCATGGCGATTGGTGCCATTCAGGAAGCCAAGCGCTTGGGCATGCGTGTGCCGCAAGACCT
GTCTGTGGTCGGCTTTGATGACATTCAGTTTGCGCAGTACTGCGATCCACCGCTAACCACCATTTCTCAGCCGCGTTACG
AGATCGGCCGTCAGGCGATGTTGATGATGCTTGAGTTACTGCGAGGTCATGATGTGCGTGCGGGCTCGCGTCTGCTCGAC
ACCCAATTGGTCATTCGCGAGAGTGCAGCGCCGCCCCGCTCGGCCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

93.373

99.104

0.925
  cytR Vibrio parahaemolyticus RIMD 2210633

90.149

100

0.901

Multiple sequence alignment