Detailed information NTG0407912

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GPY38_RS11165
• Genome accession: NZ_CP046795
• Coordinates: 2426165..2427154 (-)
• Length: 329 a.a.
• NCBI ID: WP_004723838.1
• Uniprot ID: A0A0Q2V080
• Organism: Vibrio furnissii strain 2420-04
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2421165..2432154

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY38_RS11145	recX	2421172..2421642 (-)	471	WP_158141115.1	recombination regulator RecX	-
GPY38_RS11150	recA	2421737..2422789 (-)	1053	WP_004723845.1	recombinase RecA	Machinery gene
GPY38_RS11155	pncC	2422962..2423450 (-)	489	WP_158141116.1	nicotinamide-nucleotide amidase	-
GPY38_RS11160	mutS	2423535..2426096 (+)	2562	WP_158141117.1	DNA mismatch repair protein MutS	-
GPY38_RS11165	rpoS	2426165..2427154 (-)	990	WP_004723838.1	RNA polymerase sigma factor RpoS	Regulator
GPY38_RS11170	nlpD	2427227..2428161 (-)	935	Protein_2180	murein hydrolase activator NlpD	-
GPY38_RS11175	-	2428161..2428787 (-)	627	WP_158141118.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GPY38_RS11180	surE	2428780..2429547 (-)	768	WP_004723832.1	5'/3'-nucleotidase SurE	-
GPY38_RS11185	truD	2429540..2430586 (-)	1047	WP_004723830.1	tRNA pseudouridine(13) synthase TruD	-
GPY38_RS11190	ispF	2430618..2431094 (-)	477	WP_004723827.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GPY38_RS11195	ispD	2431144..2431857 (-)	714	WP_004723825.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GPY38_RS11200	ftsB	2431854..2432138 (-)	285	WP_004723824.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37741.44 Da
• Isoelectric Point: 4.4379

>NTDB_id=407912 GPY38_RS11165 WP_004723838.1 2426165..2427154(-) (rpoS) [Vibrio furnissii strain 2420-04]
MSISNTATKVEEFEFDSEAVNNAATDQELTTNDNDQSEEVREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNS
DPEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNM
ESLFNVEND

Nucleotide

• Length: 990 bp

>NTDB_id=407912 GPY38_RS11165 WP_004723838.1 2426165..2427154(-) (rpoS) [Vibrio furnissii strain 2420-04]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGAGTTCGATTCAGAAGCCGTGAATAACGCGGCGACCGACCA
AGAACTGACTACCAACGATAATGACCAATCTGAAGAGGTTCGTGAAGAGTTTGATGCTTCAACGAAAAGCCTCGATGCCA
CTCAGATGTATCTGAGCGAGATTGGTTTCTCACCCTTATTAACCGCCGAAGAAGAAGTGCTCTATGCTCGCCGCGCCTTG
CGTGGTGATGAGGCTGCGCGCAAACGCATGATCGAGAGCAACTTACGTCTGGTGGTCAAAATCTCTCGCCGTTATAGCAA
TCGGGGCTTGGCACTGCTTGATCTGATTGAAGAGGGCAACCTTGGCCTCATTCGTGCAGTAGAGAAGTTCGACCCAGAAC
GCGGTTTCCGTTTTTCGACTTATGCTACCTGGTGGATTCGTCAGACTATTGAACGTGCCCTGATGAACCAGACTCGTACA
ATTCGTTTACCGATTCATGTGGTGAAAGAGCTGAACATCTACTTGCGTACTGCGCGTGAGCTGTCTCAGAAACTCGACCA
CGAACCGACCGCGGAAGAAATTGCCGTGGAACTGGATAAGCCAGTGGATGATGTCAGCAAAATGCTCCGTCTGAACGAGC
GCATTAGTTCCGTCGATACGCCAATTGGCGGCGATGGTGACAAAGCATTGCTCGATATCATCCCTGATATCAACAATTCC
GACCCTGAAGTCTCCACACAGGATGATGACATTCGTGATTCGCTGGTGGCTTGGCTCGATGAGCTCAATCCGAAACAGAA
AGAAGTGCTGGCTCGCCGTTTTGGCTTGTTAGGGTATGAACCATCAACACTGGAAGAAGTGGGCCGCGAGATCAATTTGA
CCCGTGAACGTGTGCGTCAAATTCAGGTGGAAGGCTTGCGCCGACTGAGAGAAATCCTGATGAAACAGGGTTTGAACATG
GAATCGCTGTTTAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A0A0Q2V080

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	88.024	100	0.894