Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY38_RS11045 Genome accession   NZ_CP046795
Coordinates   2404692..2405210 (-) Length   172 a.a.
NCBI ID   WP_014205765.1    Uniprot ID   A0A0Q2V091
Organism   Vibrio furnissii strain 2420-04     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2399692..2410210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY38_RS11020 rimM 2399778..2400332 (-) 555 WP_004723882.1 ribosome maturation factor RimM -
  GPY38_RS11025 rpsP 2400360..2400608 (-) 249 WP_004723879.1 30S ribosomal protein S16 -
  GPY38_RS11030 ffh 2400834..2402213 (-) 1380 WP_004723876.1 signal recognition particle protein -
  GPY38_RS11035 - 2402426..2403220 (+) 795 WP_004723874.1 inner membrane protein YpjD -
  GPY38_RS11040 - 2403311..2404585 (+) 1275 WP_004723872.1 HlyC/CorC family transporter -
  GPY38_RS11045 luxS 2404692..2405210 (-) 519 WP_014205765.1 S-ribosylhomocysteine lyase Regulator
  GPY38_RS11050 - 2405236..2405841 (-) 606 WP_044367718.1 hypothetical protein -
  GPY38_RS11055 gshA 2405843..2407408 (-) 1566 WP_154180765.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18856.59 Da        Isoelectric Point: 4.6766

>NTDB_id=407909 GPY38_RS11045 WP_014205765.1 2404692..2405210(-) (luxS) [Vibrio furnissii strain 2420-04]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSEKGIHTLEHLYAGFMRAHLNGANVEIIDISP
MGCRTGFYMSLIGAPSEEQVAAAWLASMQDVLSVESQDQIPELNEYQCGTAAMHSLNEAKAIAETVIAAGIQVNKNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=407909 GPY38_RS11045 WP_014205765.1 2404692..2405210(-) (luxS) [Vibrio furnissii strain 2420-04]
ATGCCATTATTAGACAGTTTTACCGTCGACCACACTCGCATGAACGCACCGGCTGTGCGTGTTGCGAAAACCATGCAAAC
GCCGAAAGGCGACACCATTACGGTGTTTGACCTGCGTTTTACGATGCCAAACAAAGATATTCTGTCAGAGAAAGGGATTC
ATACGCTGGAGCATCTTTACGCCGGCTTTATGCGCGCGCACCTCAATGGCGCGAACGTGGAAATTATCGACATCTCGCCG
ATGGGATGTCGCACCGGGTTTTACATGAGCCTGATTGGTGCGCCAAGCGAAGAGCAAGTCGCCGCCGCTTGGTTGGCGTC
GATGCAAGACGTATTGAGTGTCGAAAGCCAGGATCAAATTCCTGAGCTGAACGAATACCAGTGCGGCACCGCAGCGATGC
ACTCCCTGAATGAAGCCAAAGCGATTGCTGAAACCGTGATTGCTGCAGGCATTCAGGTCAACAAGAACGACGAACTGGCG
CTGCCCGAATCGATGCTCAATGAGCTGAAAGTGCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2V091

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

91.279

100

0.913

Multiple sequence alignment