Detailed information NTG0407900

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GPY38_RS06870
• Genome accession: NZ_CP046795
• Coordinates: 1489962..1491383 (+)
• Length: 473 a.a.
• NCBI ID: WP_143679102.1
• Uniprot ID: -
• Organism: Vibrio furnissii strain 2420-04
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1484962..1496383

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY38_RS06840	-	1485340..1486725 (+)	1386	WP_143679099.1	L-cystine transporter	-
GPY38_RS06845	-	1486804..1487016 (-)	213	WP_158140853.1	hypothetical protein	-
GPY38_RS06850	-	1487450..1487746 (+)	297	WP_158140854.1	hypothetical protein	-
GPY38_RS06855	-	1488149..1488535 (+)	387	WP_158140855.1	hypothetical protein	-
GPY38_RS06860	-	1488532..1488822 (+)	291	WP_158140856.1	hypothetical protein	-
GPY38_RS06865	-	1488893..1489264 (+)	372	WP_158140857.1	DUF4440 domain-containing protein	-
GPY38_RS06870	sbcB	1489962..1491383 (+)	1422	WP_143679102.1	exodeoxyribonuclease I	Machinery gene
GPY38_RS06875	-	1491424..1491798 (+)	375	WP_004726196.1	CidA/LrgA family protein	-
GPY38_RS06880	-	1491789..1492469 (+)	681	WP_014205225.1	LrgB family protein	-
GPY38_RS06885	cdd	1492678..1493565 (+)	888	WP_004726199.1	cytidine deaminase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54285.69 Da
• Isoelectric Point: 4.8928

>NTDB_id=407900 GPY38_RS06870 WP_143679102.1 1489962..1491383(+) (sbcB) [Vibrio furnissii strain 2420-04]
MQQQQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMEFNIIGEPLVIYCQLPSDYLPAPEAALITGIIPQKAMAQGLPEPE
FIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGVVWPENDEGFTS
FKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFEYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYT
SWIVPIAWHPTNQNAVIVVDLAKDPQPLLDLDVESLHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAAT
IGIDRELCLANLARIRQSPDIREKLAALFSIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTNPELLGELDITFSDKR
IEPLLFRYRARNFPLTLDDEEQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=407900 GPY38_RS06870 WP_143679102.1 1489962..1491383(+) (sbcB) [Vibrio furnissii strain 2420-04]
ATGCAGCAACAGCAGCCCACTTATTTTTTCTTTGACTATGAGACGTGGGGCACCAGCCCGGCCAAAGACCGTCCGAGTCA
GTTTGCTGGTGTGCGCACAGACATGGAGTTCAATATCATCGGTGAGCCGTTGGTGATTTACTGCCAATTGCCATCGGATT
ACCTGCCGGCGCCAGAAGCCGCGCTGATTACTGGCATCATTCCGCAAAAAGCGATGGCGCAAGGGCTGCCTGAGCCCGAA
TTCATCGCCAAAATTCACGCCGAGTTATCGACACCAAACACCACAAGCCTTGGGTACAACAGCATTCGTTTCGACGATGA
AGTTACCCGCTATACCTGTTATCGCAACTTCCTTGACCCGTATGCTTGGAGCTGGCAAAACGGCAACTCCCGTTGGGATT
TACTGGATGTGATGCGTGCATGCCACGCATTGCGCCCGGAAGGTGTGGTGTGGCCAGAAAACGACGAAGGGTTTACCAGC
TTTAAACTGGAGCATTTGTCAAAAGCCAACGGCATTGAGCACGAAAATGCGCACGATGCGATGGCCGATGTGATTGCGAC
GATTGAACTGGCGAAAAAAGTCAAAGCGGCGCAACCCAAGCTGTTTGAGTATTTCTTCTCGATGCGTCATAAACGCAAGC
TCAATGAGCTAATTGATATTGTCAACATGACGCCGCTGATGCATGTCTCTGGCATGCTGGGCCGTGAATGCCAATACACC
AGTTGGATTGTGCCGATTGCTTGGCACCCGACCAACCAAAACGCGGTCATTGTGGTGGATTTAGCCAAAGACCCGCAGCC
GCTGCTCGATTTGGATGTGGAATCACTGCACGCGCGTTTATACACTCGTCATGACGATTTAGCGCCAGATGAATTGCCTG
TGCCCGTCAAGCTGGTTCATCTCAACAAGTGCCCGATTCTAGCCCCGGCGAAAACGCTCACCGCCGAAAATGCCGCCACT
ATCGGCATCGACCGCGAACTGTGCTTGGCCAACTTGGCACGCATTCGTCAGTCTCCCGATATTCGCGAAAAACTGGCGGC
GCTGTTTAGCATTGAGCGCGAATTTGAAGCCTCGAACGATGTGGATACGCAGCTCTATGACGGGTTCTTCTCCCCTGCAG
ATAAAGCCGCGATGGAAATTATTCGTTCCACGAATCCTGAACTGCTCGGCGAGTTGGATATCACGTTCAGCGACAAACGC
ATTGAACCCCTGCTGTTTCGTTACCGCGCGCGCAACTTCCCGTTGACGCTCGACGACGAAGAGCAACGCCGCTGGGCGAA
CCATTGTCGCGATTACTACGAAACGCATCTGCCCGATTACATGCTGAACCTGGAAAATCTGGTGCATGAACATGAAAGTG
ATGAAAAGAAAATCGCGATTCTCAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCTTAG

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (209-469)

• Exonuclease (RNase_T) (10-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	83.439	99.577	0.831