Detailed information NTG0407898

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: GPY38_RS00855
• Genome accession: NZ_CP046795
• Coordinates: 188163..191555 (-)
• Length: 1130 a.a.
• NCBI ID: WP_041942483.1
• Uniprot ID: -
• Organism: Vibrio furnissii strain 2420-04
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 183163..196555

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY38_RS00840	-	183614..184639 (-)	1026	WP_004729001.1	ABC transporter permease	-
GPY38_RS00845	-	184642..185628 (-)	987	WP_154180369.1	ABC transporter permease	-
GPY38_RS00850	-	185793..187463 (-)	1671	WP_004728998.1	ABC transporter substrate-binding protein	-
GPY38_RS00855	chiS	188163..191555 (-)	3393	WP_041942483.1	response regulator	Regulator
GPY38_RS00860	rsmC	191754..192776 (-)	1023	WP_158140225.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
GPY38_RS00865	-	192872..193957 (-)	1086	WP_004728992.1	AI-2E family transporter	-
GPY38_RS23275	-	194033..194155 (+)	123	WP_004728990.1	hypothetical protein	-
GPY38_RS00870	hemL	194252..195544 (-)	1293	WP_004728988.1	glutamate-1-semialdehyde 2,1-aminomutase	-
GPY38_RS00875	erpA	195856..196197 (+)	342	WP_014204486.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1130 a.a.
• Molecular weight: 128116.52 Da
• Isoelectric Point: 6.2694

>NTDB_id=407898 GPY38_RS00855 WP_041942483.1 188163..191555(-) (chiS) [Vibrio furnissii strain 2420-04]
MFRFNRKQKFKRLQNTLMLAFLVLSITPLTVTAIFFLQSHSKDLQEQSTSHLLSVRDTKQQQVIDYLSAKESEVMGFVRS
ELAYASGGRFYGLVNAFQRLGVDIDQAREHAQQRYVTGSGDEVKTSVLPESSSYVGSERYRLLHKRYHWAYLELLKRSDF
DDILLVDITGNVVYSIYKRENYGTNLLTGRFKDSNLGQTFRQLEQQVSEHRKTNEDYTPVVLSDFVDEQGRQFAWMGAPI
IQQGYLHSYAMFRLPNNGITKLIADTNTTSSMRTLLVGQDHRSRTLAYDQPEIDKSTQVIDWALNGSRSVGTYTNLDDEK
TIAAYAPINLKDLHWALVVELPEKEAFARIRQLEKLFIFAMLTAIILVVIASHYLSNFITSPLLKLTWAAERVSAGDLDE
TMINTDRRDEIGRLAVSFERMQRSIREKMQLIKAQNKELESNIQVIRKQNDELQLANKLKDEFLATTSHELRTPLHGMIG
IAEALTSGANGPINAAHKYQLDIIISSGQRLATLVDDLLDYHKMRYGNLDIHRTAVNLSNATRLVLELSNHLLGKKQIRI
INQVAEEAPVWVSADAQRLEQVLYNLIGNAIKYTSEGKIVISATRVDQHIRVQVVDTGQGIPAEQLEHIFEPLIQAGHDT
SRYRQGAGLGLSISRQLIELMQGSLYVSSQPMVGTTFSFTLPMASDDEIAQAQLTQQPHFQAPELTELDLPDHHSIPENP
TGPLLLVADDEPVNLRVLDSFLRLEGYRVRTAQDGNEVLQAVAEEKPELLLLDIMMPGMSGYQVCEELRKTYDHAALPVI
MLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLTASKAEQRRLENAELQKELKHRAMVEASLLETQGRLLEQL
ESAPEAIVCIREDNKVRFANDAAARLFKRSQEQLKRSNADELIAQKYLLVEQDHYCGNVDIFIDDTRQHVNADVLRLPKG
AGLQAMYIFNVGGNINAARIHNLETAVEALSSYAFDGDKDKLQQLKELGGEFTRLADKASGDGQSKQELMRSVLVDAMTS
ALNYWERVSGQSKFTFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLNSLDYILDHCQEQGPERTYIEVQR
DKLQKLLTSE

Nucleotide

• Length: 3393 bp

>NTDB_id=407898 GPY38_RS00855 WP_041942483.1 188163..191555(-) (chiS) [Vibrio furnissii strain 2420-04]
ATGTTTAGGTTCAATCGGAAGCAAAAGTTTAAGCGCCTGCAAAATACCCTCATGCTCGCGTTCTTGGTTCTTAGCATCAC
CCCATTGACGGTGACGGCGATTTTTTTCCTTCAATCTCACAGTAAAGATCTTCAGGAACAAAGCACATCGCACCTTCTTT
CGGTCCGTGATACGAAGCAACAGCAAGTCATCGACTACCTCAGCGCGAAAGAGTCTGAAGTCATGGGCTTTGTTCGCTCA
GAACTGGCTTACGCCAGTGGCGGGCGTTTCTATGGTTTAGTGAACGCATTTCAACGCTTAGGCGTTGATATCGACCAAGC
ACGAGAGCATGCACAGCAGCGCTACGTCACCGGTTCTGGTGATGAAGTCAAAACCTCCGTGCTACCAGAATCGAGCAGTT
ATGTCGGCAGTGAGCGCTATCGCCTTCTGCACAAACGCTACCATTGGGCCTATCTCGAGCTACTCAAACGGTCCGACTTT
GACGACATTCTGTTGGTCGATATCACAGGCAACGTGGTGTACTCCATCTACAAGCGTGAGAACTACGGCACCAACTTGCT
CACGGGGCGATTCAAAGACAGTAACTTGGGGCAAACCTTCCGCCAGTTGGAACAGCAAGTCAGTGAACACCGAAAAACCA
ACGAAGATTACACACCAGTGGTGTTGTCGGACTTTGTCGATGAACAAGGCCGTCAATTTGCTTGGATGGGCGCGCCCATT
ATTCAACAAGGCTATCTACACAGCTACGCCATGTTCCGTTTACCCAACAACGGCATCACCAAGCTGATCGCAGACACCAA
CACCACGTCATCGATGCGCACGTTATTGGTCGGTCAGGATCATCGTTCACGCACGCTGGCTTACGATCAACCGGAAATCG
ATAAAAGTACGCAAGTGATTGATTGGGCGCTCAATGGCAGCCGATCCGTCGGTACGTACACCAATCTTGATGACGAGAAA
ACCATCGCCGCTTACGCGCCGATCAATCTCAAGGACCTGCATTGGGCCTTGGTGGTCGAACTGCCTGAAAAAGAAGCTTT
CGCACGCATTCGTCAACTGGAAAAACTGTTCATCTTCGCGATGCTGACTGCCATTATTTTGGTGGTGATTGCCTCACATT
ACCTGTCGAACTTCATCACCTCACCCCTGCTAAAACTGACATGGGCCGCTGAACGCGTGTCGGCTGGCGATTTAGATGAA
ACCATGATCAATACCGATCGGCGTGATGAAATTGGGCGACTGGCGGTCAGTTTTGAACGCATGCAGCGCTCGATTCGCGA
AAAAATGCAGCTGATTAAGGCGCAGAATAAAGAGCTCGAAAGCAACATTCAGGTCATCCGTAAACAGAATGATGAGTTGC
AACTGGCCAACAAACTCAAAGATGAGTTTCTGGCCACAACATCCCATGAGCTGCGAACCCCACTGCATGGCATGATCGGG
ATTGCCGAAGCACTGACTTCCGGCGCCAATGGCCCAATCAACGCTGCGCATAAGTATCAACTCGACATCATCATCAGCAG
CGGGCAACGTTTGGCCACACTGGTCGATGACCTACTCGATTACCACAAAATGCGTTATGGCAATCTGGATATTCATCGCA
CGGCTGTCAATCTCTCTAATGCCACACGTTTGGTTTTGGAGCTGTCAAATCACCTGTTGGGTAAAAAACAGATTCGCATC
ATCAATCAGGTCGCAGAAGAAGCGCCGGTATGGGTCTCTGCTGATGCGCAGCGTCTTGAGCAAGTGTTGTACAACTTGAT
TGGCAACGCGATCAAATACACCTCCGAAGGCAAGATTGTCATTTCTGCCACTCGCGTTGACCAACACATTCGCGTACAAG
TGGTGGATACCGGACAAGGGATTCCGGCAGAGCAATTGGAACATATTTTCGAACCCCTTATTCAAGCCGGGCACGACACC
AGTCGCTACCGCCAAGGGGCCGGACTGGGCCTCTCGATCAGCCGTCAGTTGATCGAGCTGATGCAAGGGTCGCTGTATGT
CAGCAGTCAACCCATGGTCGGAACGACGTTTAGCTTCACACTGCCGATGGCCTCTGACGACGAAATCGCCCAAGCGCAGT
TGACGCAACAACCGCACTTCCAAGCGCCTGAATTGACTGAACTGGATCTGCCAGACCATCACAGCATTCCGGAGAATCCA
ACCGGGCCGTTGCTCTTGGTGGCTGATGATGAGCCGGTGAACTTACGCGTGCTCGATAGCTTCCTGCGTCTTGAAGGCTA
TCGCGTGCGCACCGCTCAGGATGGGAACGAAGTCCTGCAGGCCGTCGCAGAAGAGAAACCTGAATTGTTGCTACTGGACA
TCATGATGCCCGGCATGAGCGGCTATCAGGTGTGTGAAGAGCTGCGTAAAACGTACGATCATGCAGCGTTGCCAGTCATC
ATGCTCACCGCGCTCAATCAATCCGATGACCGAGTGCGCGGCTTTGAAGCCGGCGCCAACGATTATCTATCCAAACCGTT
CAATAAGCAGGAATTAGCCGCCCGTATCGTCGCGCACTTGACCGCAAGTAAAGCGGAACAACGTCGCCTTGAGAACGCGG
AACTGCAAAAAGAACTCAAACATCGCGCCATGGTGGAAGCAAGCTTGCTGGAAACACAAGGCCGACTGCTGGAACAGCTG
GAATCAGCGCCAGAAGCGATTGTGTGCATTCGGGAAGATAACAAAGTTCGCTTTGCCAATGACGCCGCAGCGCGCCTGTT
TAAACGCAGTCAGGAACAGCTCAAACGCTCCAACGCTGACGAATTGATTGCGCAAAAATACTTATTGGTCGAACAAGATC
ACTATTGTGGCAATGTCGACATTTTCATCGACGACACGCGCCAACACGTGAACGCCGATGTCTTGCGCCTACCCAAAGGT
GCTGGATTGCAAGCGATGTATATCTTTAATGTCGGCGGTAACATTAACGCGGCGCGCATCCACAACCTTGAAACGGCGGT
TGAAGCTCTATCAAGTTACGCGTTTGACGGTGACAAAGATAAATTGCAACAACTCAAAGAGCTGGGCGGTGAATTCACAC
GCTTGGCCGACAAAGCCTCCGGTGACGGCCAATCCAAACAAGAGTTGATGCGTTCTGTTCTGGTCGATGCCATGACCTCC
GCCCTCAACTACTGGGAAAGAGTCTCCGGTCAAAGCAAGTTCACCTTTGCTGAACAAAGTGGGCTGTGGCGCGTCTACCT
CGATCGCAGTACGCTGCAAACTCGAACACTCGACAAATACCTGCGTATCGAAACACTGCCTAAAACGCCGCGTTGGCGCA
CCGTGCTTAACTCGTTAGATTACATTCTGGATCACTGCCAGGAACAAGGACCAGAACGCACTTACATTGAAGTGCAACGG
GATAAGTTACAAAAGCTACTGACGTCAGAATAA

Domains

Predicted by InterproScan.

• HAMP domain (HAMP) (375-427)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• PAS fold (PAS) (877-923)

• Response regulator receiver domain (Response_reg) (726-836)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (575-683)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	84.248	100	0.842