Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GPX86_RS16015 Genome accession   NZ_CP046794
Coordinates   637290..638387 (+) Length   365 a.a.
NCBI ID   WP_158145348.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 9502-00     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 632290..643387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX86_RS15985 glpK 633158..634678 (+) 1521 WP_004396681.1 glycerol kinase GlpK -
  GPX86_RS15990 - 634782..635033 (-) 252 WP_072670703.1 YgjV family protein -
  GPX86_RS15995 - 635357..635686 (-) 330 WP_004396679.1 DUF496 family protein -
  GPX86_RS16000 - 636077..636280 (+) 204 WP_040905109.1 hypothetical protein -
  GPX86_RS16005 - 636323..636955 (+) 633 WP_158145346.1 YceH family protein -
  GPX86_RS16010 - 636958..637239 (+) 282 WP_158137233.1 GIY-YIG nuclease family protein -
  GPX86_RS16015 luxP 637290..638387 (+) 1098 WP_158145348.1 substrate-binding domain-containing protein Regulator
  GPX86_RS16020 luxQ 638445..640976 (+) 2532 WP_199244880.1 LuxQ periplasmic sensor domain-containing protein Regulator
  GPX86_RS16025 - 641040..641564 (-) 525 WP_040905104.1 hypothetical protein -
  GPX86_RS16030 modA 641754..642536 (+) 783 WP_158137236.1 molybdate ABC transporter substrate-binding protein -
  GPX86_RS16035 modB 642517..643216 (+) 700 Protein_565 molybdate ABC transporter permease subunit -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41735.40 Da        Isoelectric Point: 6.0828

>NTDB_id=407891 GPX86_RS16015 WP_158145348.1 637290..638387(+) (luxP) [Vibrio metschnikovii strain 9502-00]
MKIRLLIVLLSWFPMAVFANPSQLLSDYWSYQAFLEAHPEQQTLTDLLAKSVQTRAEPLPLALAQTRPVTISVIYPGQQV
SDYWSRNIKAFEARMHELGITYQLHQVFTRPSLDARQQSISLMEAMQNKTDYLIFTLDTMRHRKFIDHLLHTSETKVILQ
NITTPIRDWQGRQPLLYVGFDHEIGAQHLAEFYQRKLPQGADYGVLYFSEGYISEARGDSFIHNVKHRFHLASSYYTTAT
MESGYQATLDIVSNNPQITFLYACSTDIALGAAQALRELEREDIYLNGWGGGSAELEALQDGRLEVTVMRMNDDTGIAMA
EAIKRDLAGLPVPLVYSGEFELVTQNTTTEHIERLKQRAFRYSDR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=407891 GPX86_RS16015 WP_158145348.1 637290..638387(+) (luxP) [Vibrio metschnikovii strain 9502-00]
ATGAAAATAAGACTGCTGATCGTGTTACTGAGTTGGTTTCCTATGGCCGTGTTCGCTAATCCCTCACAACTGCTGAGTGA
TTACTGGTCCTATCAAGCGTTTTTAGAGGCACATCCCGAGCAACAGACATTAACCGATTTATTGGCGAAAAGTGTCCAGA
CTCGAGCCGAACCACTACCTCTAGCTCTAGCTCAAACTCGCCCAGTCACGATTTCAGTCATCTATCCCGGTCAGCAAGTG
TCGGACTATTGGTCTCGTAATATTAAAGCGTTTGAAGCTCGTATGCATGAGCTTGGCATTACCTATCAATTACACCAAGT
TTTTACTCGACCTAGCTTAGATGCCCGTCAGCAAAGTATCTCCTTAATGGAAGCGATGCAAAATAAAACCGATTATCTGA
TTTTTACCTTAGATACCATGCGCCATCGAAAATTTATTGATCATCTACTGCATACCTCTGAGACAAAAGTCATTTTACAA
AATATCACCACGCCCATTCGTGATTGGCAAGGTCGTCAGCCTTTATTGTATGTTGGGTTTGACCATGAAATTGGCGCTCA
GCATTTGGCTGAGTTTTACCAACGCAAGCTGCCACAAGGCGCAGATTATGGGGTGTTATATTTTTCAGAAGGGTACATCA
GTGAAGCGCGTGGAGACAGTTTTATCCATAATGTCAAACACCGTTTTCATTTAGCCTCGTCTTACTACACCACCGCCACG
ATGGAGAGCGGCTATCAAGCGACGCTCGATATCGTTAGTAATAATCCTCAAATTACCTTTCTCTATGCTTGTTCGACCGA
TATTGCGCTTGGAGCAGCACAAGCCTTGCGAGAACTTGAACGTGAAGATATCTATCTTAATGGCTGGGGGGGAGGTTCGG
CAGAGCTTGAGGCATTGCAAGATGGCCGATTAGAGGTCACCGTCATGCGTATGAATGACGATACGGGCATTGCGATGGCA
GAAGCCATCAAACGAGATCTGGCTGGTTTGCCAGTGCCACTGGTTTACTCTGGTGAATTTGAACTGGTGACTCAAAATAC
CACCACTGAACACATTGAACGACTCAAACAACGTGCGTTTCGATATTCTGATCGCTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(71-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

65.041

100

0.658

Multiple sequence alignment