Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   SSUD9_RS06380 Genome accession   NC_017620
Coordinates   1296230..1296712 (+) Length   160 a.a.
NCBI ID   WP_002938080.1    Uniprot ID   -
Organism   Streptococcus suis D9     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1291230..1301712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD9_RS06355 (SSUD9_1306) - 1292478..1293788 (-) 1311 WP_002938090.1 GntP family permease -
  SSUD9_RS06360 (SSUD9_1307) folK 1293839..1294327 (-) 489 WP_009910002.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  SSUD9_RS06365 (SSUD9_1308) folB 1294324..1294686 (-) 363 WP_002938086.1 dihydroneopterin aldolase -
  SSUD9_RS06370 (SSUD9_1309) folP 1294679..1295491 (-) 813 WP_002938084.1 dihydropteroate synthase -
  SSUD9_RS06375 (SSUD9_1310) folE 1295500..1296063 (-) 564 WP_002938082.1 GTP cyclohydrolase I FolE -
  SSUD9_RS06380 (SSUD9_1311) mutX 1296230..1296712 (+) 483 WP_002938080.1 NUDIX hydrolase Machinery gene
  SSUD9_RS06385 (SSUD9_1312) - 1296761..1297438 (-) 678 WP_002938079.1 DUF4956 domain-containing protein -
  SSUD9_RS06390 (SSUD9_1313) - 1297425..1298168 (-) 744 WP_002938076.1 polyphosphate polymerase domain-containing protein -
  SSUD9_RS06395 (SSUD9_1314) - 1298361..1298663 (+) 303 WP_002938072.1 hypothetical protein -
  SSUD9_RS06400 (SSUD9_1315) - 1298684..1298950 (-) 267 WP_002938070.1 DUF2087 domain-containing protein -
  SSUD9_RS06405 (SSUD9_1316) pheT 1299005..1301404 (-) 2400 WP_002938067.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18496.88 Da        Isoelectric Point: 4.5662

>NTDB_id=40789 SSUD9_RS06380 WP_002938080.1 1296230..1296712(+) (mutX) [Streptococcus suis D9]
MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREIFEETGLTVTKHALKGVITFPDF
TPNTDWYTYVFKITGFEGSLIDCNEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGGKLLDYSVDFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=40789 SSUD9_RS06380 WP_002938080.1 1296230..1296712(+) (mutX) [Streptococcus suis D9]
ATGACCAAGAAACCCGTCCAACTCGCTACGATTTGCTACATTGATAATGGTAAGGAATTTCTTCTCCTTCATCGAAACAA
GAAAGAAAACGATGTCCATCAAGGAAAATGGATTGGAGTTGGTGGCAAACTAGAACCCGGCGAAACGCCACAGGCTTGTG
CCATTCGAGAAATCTTTGAGGAAACTGGGCTTACTGTAACAAAGCATGCTCTAAAAGGAGTGATAACCTTCCCAGACTTT
ACTCCAAACACAGACTGGTACACCTATGTCTTTAAGATAACTGGTTTTGAAGGAAGTCTTATTGACTGCAATGAAGGTGA
CTTAGAGTGGGTTCCCTATGACCAAGTCTTGTCCAAACCAACTTGGGAGGGCGACCGGCATTTTCAAGAATGGCTATTAG
AGGACAAACCATTTTTTTCCGCTTGCTTCCGCTATGATGGGGGCAAACTGCTTGATTACAGTGTTGATTTTTATGAAGAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

81.046

95.625

0.775

Multiple sequence alignment