Detailed information NTG0407887

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: GPX86_RS10775
• Genome accession: NZ_CP046793
• Coordinates: 2398576..2401914 (-)
• Length: 1112 a.a.
• NCBI ID: WP_233268507.1
• Uniprot ID: -
• Organism: Vibrio metschnikovii strain 9502-00
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2393576..2406914

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPX86_RS10760	-	2393922..2394947 (-)	1026	WP_158144715.1	ABC transporter permease	-
GPX86_RS10765	-	2394950..2395936 (-)	987	WP_004394190.1	ABC transporter permease	-
GPX86_RS10770	-	2396157..2397827 (-)	1671	WP_004394189.1	ABC transporter substrate-binding protein	-
GPX86_RS10775	chiS	2398576..2401914 (-)	3339	WP_233268507.1	response regulator	Regulator
GPX86_RS10780	rsmC	2402170..2403192 (-)	1023	WP_158144717.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
GPX86_RS10785	-	2403258..2404343 (-)	1086	WP_158144718.1	AI-2E family transporter	-
GPX86_RS10790	hemL	2404785..2406077 (-)	1293	WP_154170226.1	glutamate-1-semialdehyde 2,1-aminomutase	-

Sequence

Protein

• Length: 1112 a.a.
• Molecular weight: 125825.29 Da
• Isoelectric Point: 6.6472

>NTDB_id=407887 GPX86_RS10775 WP_233268507.1 2398576..2401914(-) (chiS) [Vibrio metschnikovii strain 9502-00]
MLAFLAVSLTPLTVTALFFLHSHSKDLQEQSTSHLISVRDTKQQQIIDYLSAKESEVMGFVRSELAYASGGRFYGLVNAF
QRLGENIEQARLHAQQRYIPGSGDQIRTSILPKSSSYAGSERYRLLHKRYHASYLELLKRSDFDDILIVDLQGNVVYSIF
KHAYYGTNLLSDNPQNSPLGRTFQQLEQQVTEQRKVNEDYTPVIVSDFAEYNGRQYAWMGAPIIQQGYLHSYAMFRLPNN
GITKLIADHNQDSAKRTLLVGQDHRSRTLAYQQADVDTSSEVIQLALNGSRSVTTYENTLGEKQIAAYAPIHLQNLNWAL
VVELPEKEAFARVRQLEKLFIFAMLTAIILVVIASHYLSNFITLPLLKLTWAAERVSAGDLDQPIIHTQRRDEIGRLAVS
FERMQRSIREKIQLIKSQNIELEDNIQLIRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALTSGANGPISAAH
RYQLDIIISSGQRLANLVDDLLDYHKMRYGHLDIETQAVNLSNATRMVLELSHHLLGKKTLRIINQIADQPLWVSADAQR
LEQVLYNLIGNAIKYTSEGKIVISATPMKHQVRVQVVDTGQGIPAEQLEHIFEPLIQAGHDSSRYRQGAGLGLTISRQLI
ELMQGSLYVSSQPMVGTTFSFTLPLATSQQIAQAQRSQIAHFQAPELSSIDDLTQPQQPENPQGPLLLIADDEPVNLRVL
DSFLRLEGYRVRTALDGHEVIEAIAKEKPELLLLDVMMPGMSGYQVCEQLREQYDHAQLPIIMLTALTQSDDRIRGFAAG
ANDYLSKPFNKQELAARIKAHLSASKAEQRRIENAQLQKELKQRAMVEASLLETQGRLLEQLDSAPEAILCLREDNKIRF
ANQAACKLFKRSQDQLKRSNAEELIAPKYLLVEQEHYCGNIDIYIDDVRQHLSADVLRLPEGSSFKTMYIFNVGGNLNAN
RIHQLETAVDALSSYAFAGDKDKLQQLKELGGEFTRIAEKVAGETPSKQALMRAVLVDAMTSALDYWEKVTGQSKFTFAE
QSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLNSLDYILEHCQEQGPERTYIEVQRDKLQQLLTSE

Nucleotide

• Length: 3339 bp

>NTDB_id=407887 GPX86_RS10775 WP_233268507.1 2398576..2401914(-) (chiS) [Vibrio metschnikovii strain 9502-00]
ATGTTAGCGTTTCTGGCAGTAAGCCTCACTCCGCTAACGGTAACAGCCTTGTTCTTTCTTCATTCACACAGTAAAGACTT
ACAAGAACAAAGTACCTCACATCTCATTTCTGTACGAGATACCAAGCAGCAACAAATTATCGATTATCTCAGCGCCAAAG
AGTCTGAAGTGATGGGATTTGTTCGTTCAGAACTTGCCTATGCCAGCGGTGGACGTTTTTACGGTTTGGTCAATGCCTTT
CAACGATTAGGGGAAAATATTGAGCAAGCGCGTCTGCACGCTCAACAACGCTATATTCCCGGTTCTGGCGATCAAATCAG
AACCTCTATTTTACCTAAATCAAGTAGTTACGCAGGTAGTGAACGTTATCGTCTACTGCACAAACGTTACCATGCAAGTT
ATCTAGAGCTACTGAAACGGTCTGACTTTGACGATATTCTGATCGTCGATCTACAGGGTAATGTGGTCTATTCAATTTTC
AAGCATGCGTATTATGGCACGAATCTACTCAGCGATAATCCGCAGAACTCACCTCTAGGACGAACCTTCCAGCAACTGGA
ACAGCAAGTGACCGAGCAACGTAAGGTCAATGAAGACTATACCCCTGTCATTGTGTCTGATTTTGCTGAATACAATGGAC
GCCAATATGCTTGGATGGGCGCACCCATTATTCAACAAGGCTATCTTCACAGTTATGCCATGTTCCGTCTGCCGAATAAT
GGCATCACCAAATTAATTGCCGATCATAATCAAGACTCAGCCAAAAGGACATTATTGGTTGGCCAAGATCACCGTTCTCG
TACGCTGGCTTATCAACAAGCCGATGTGGATACCAGCAGTGAAGTGATTCAGTTGGCACTCAATGGCTCGCGCTCGGTCA
CAACCTATGAGAATACGCTCGGTGAAAAACAGATTGCCGCTTATGCGCCGATTCATTTGCAAAATCTCAATTGGGCTTTA
GTTGTCGAACTCCCTGAAAAAGAAGCCTTTGCCCGAGTAAGACAACTGGAAAAATTATTTATTTTCGCGATGTTAACGGC
GATCATCTTAGTAGTCATCGCTTCTCACTATCTCTCTAACTTTATTACTCTCCCTTTACTCAAACTCACTTGGGCAGCAG
AACGCGTCTCCGCCGGTGATTTGGATCAACCGATCATTCATACTCAACGGCGTGATGAAATTGGCCGTTTGGCGGTTAGT
TTTGAAAGAATGCAACGCTCGATCCGTGAAAAAATCCAACTGATCAAATCACAAAATATTGAGTTAGAAGATAATATCCA
GCTGATTCGTAAACAAAATGATGAACTGCAATTAGCCAACAAACTTAAAGATGAGTTTTTAGCGACCACATCACATGAGC
TACGTACTCCATTACACGGCATGATAGGCATTGCCGAAGCTTTGACTTCCGGTGCTAATGGGCCAATCAGCGCAGCCCAC
CGCTATCAACTCGACATTATTATCAGTAGCGGTCAACGTCTTGCCAATCTTGTTGATGATTTACTCGATTATCACAAGAT
GCGTTATGGTCATCTCGATATCGAAACTCAAGCCGTTAATCTCTCCAATGCGACCAGAATGGTACTTGAGCTGTCTCACC
ATTTACTGGGTAAAAAAACACTACGAATTATTAACCAAATTGCCGATCAGCCATTATGGGTATCGGCTGATGCTCAGCGA
CTTGAACAGGTACTGTATAACCTGATTGGTAATGCGATTAAATATACCTCTGAAGGAAAAATTGTTATTTCAGCTACCCC
AATGAAGCATCAAGTTAGAGTCCAAGTGGTCGATACTGGACAAGGCATTCCTGCTGAGCAATTAGAACATATTTTTGAAC
CGCTCATTCAAGCCGGGCACGATAGCAGTCGTTATCGTCAAGGTGCGGGTTTAGGATTGACGATTAGCCGCCAATTAATT
GAATTAATGCAAGGCTCCTTGTACGTCAGTAGCCAGCCGATGGTCGGCACCACCTTTAGTTTTACGCTGCCACTCGCGAC
TTCACAACAAATTGCTCAAGCGCAGCGCAGTCAAATTGCTCATTTTCAAGCACCGGAATTATCCTCGATTGACGATCTCA
CTCAACCGCAACAACCAGAAAACCCACAAGGTCCTCTACTGCTGATTGCCGATGATGAGCCGGTTAACCTGCGTGTATTA
GACAGTTTTTTACGTCTAGAGGGCTATCGTGTCCGAACAGCACTTGATGGCCATGAGGTTATCGAAGCGATTGCCAAAGA
GAAACCTGAACTTTTACTGCTCGATGTGATGATGCCCGGCATGAGTGGTTATCAGGTCTGTGAGCAATTAAGAGAGCAGT
ACGATCATGCGCAACTACCCATTATAATGCTAACCGCATTAACCCAAAGTGATGATCGGATCAGAGGCTTTGCCGCTGGC
GCCAATGACTATTTATCAAAACCTTTTAATAAACAAGAACTCGCCGCTCGAATTAAAGCTCACTTAAGCGCCAGTAAAGC
AGAGCAACGCCGTATTGAAAATGCTCAACTTCAAAAAGAGCTCAAACAACGAGCGATGGTCGAAGCCAGTTTACTCGAAA
CTCAAGGCCGACTATTAGAGCAACTGGATTCAGCGCCAGAAGCGATTTTGTGTTTACGAGAAGACAATAAAATCCGCTTT
GCCAATCAGGCGGCCTGTAAGCTATTTAAACGCAGCCAAGATCAACTCAAACGCTCTAACGCCGAAGAGTTGATTGCCCC
TAAATATTTACTGGTTGAGCAAGAGCATTATTGCGGGAACATCGATATTTATATCGATGATGTCAGACAACACCTCTCCG
CTGATGTGCTTCGCTTACCGGAAGGAAGCAGTTTTAAAACGATGTACATTTTTAATGTCGGTGGAAATCTTAACGCCAAT
CGTATCCATCAACTGGAAACCGCCGTCGACGCGTTATCAAGCTATGCTTTTGCTGGTGATAAAGACAAACTTCAGCAGTT
AAAAGAGCTAGGAGGTGAATTTACTCGCATCGCAGAAAAAGTGGCCGGAGAAACCCCATCAAAACAGGCGTTAATGCGCG
CCGTGTTGGTTGATGCGATGACGAGCGCTCTCGACTACTGGGAAAAAGTCACAGGACAAAGTAAGTTTACTTTTGCTGAA
CAAAGTGGATTATGGCGCGTCTATTTAGATCGTAGTACTTTGCAAACTCGAACGTTGGATAAGTACTTACGTATTGAAAC
GCTACCCAAAACGCCTCGCTGGCGCACGGTGCTGAACTCTCTTGACTACATATTGGAACACTGTCAGGAGCAAGGCCCAG
AGCGAACCTACATCGAAGTACAACGAGATAAATTACAGCAATTGTTAACGAGCGAGTAA

Domains

Predicted by InterproScan.

• His Kinase A (phospho-acceptor) domain (HisKA) (443-508)

• Response regulator receiver domain (Response_reg) (708-819)

• HAMP domain (HAMP) (358-410)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (557-666)

• PAS fold (PAS) (860-908)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	80.396	100	0.804