Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GPX86_RS09310 Genome accession   NZ_CP046793
Coordinates   2094854..2095855 (+) Length   333 a.a.
NCBI ID   WP_004394443.1    Uniprot ID   A0AAW8GWK2
Organism   Vibrio metschnikovii strain 9502-00     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2089854..2100855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX86_RS09290 metJ 2089981..2090298 (+) 318 WP_040903918.1 met regulon transcriptional regulator MetJ -
  GPX86_RS09295 - 2090366..2091652 (-) 1287 WP_004394440.1 malic enzyme-like NAD(P)-binding protein -
  GPX86_RS09300 rpmE 2091876..2092094 (-) 219 WP_004394441.1 50S ribosomal protein L31 -
  GPX86_RS09305 priA 2092340..2094541 (+) 2202 WP_158144622.1 primosomal protein N' -
  GPX86_RS09310 cytR 2094854..2095855 (+) 1002 WP_004394443.1 DNA-binding transcriptional regulator CytR Regulator
  GPX86_RS09315 - 2095976..2096518 (+) 543 WP_040903920.1 SPOR domain-containing protein -
  GPX86_RS09320 hslV 2096707..2097261 (+) 555 WP_004394445.1 ATP-dependent protease subunit HslV -
  GPX86_RS09325 hslU 2097300..2098631 (+) 1332 WP_158145001.1 HslU--HslV peptidase ATPase subunit -
  GPX86_RS09330 - 2098718..2099635 (+) 918 WP_158138979.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  GPX86_RS09335 rraA 2099711..2100229 (+) 519 WP_154169966.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36633.26 Da        Isoelectric Point: 6.6351

>NTDB_id=407876 GPX86_RS09310 WP_004394443.1 2094854..2095855(+) (cytR) [Vibrio metschnikovii strain 9502-00]
MATMKDVAQLAGVSTATVSRALMNPEKVSTTTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVVIVPDICDPYYTEIIRG
IEDVAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGADLPFDVSKAEQKNLPPMVMACEYAPELELPTVHIDN
LTSAFEAVNYLTQMGHKKIAQISGPVGAVLCEFRQQGYQQALRRAGLVKNPTYTVVGDFSFESGAKAVRQLLALSEPPSA
IFCHNDAMAIGAMQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTICQPRYEIGRQTMLMMLELLRGRDVQAGSRLLE
THLVVRSSAAPPR

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=407876 GPX86_RS09310 WP_004394443.1 2094854..2095855(+) (cytR) [Vibrio metschnikovii strain 9502-00]
ATGGCGACAATGAAGGACGTTGCCCAGTTGGCAGGTGTCTCTACCGCGACGGTATCTCGTGCGTTGATGAATCCTGAGAA
AGTATCCACCACCACTCGTAAACGAGTGGAAGAAGCGGTACTTGAAGCTGGCTACTCCCCCAACTCTTTAGCGCGAAATC
TGCGCCGTAATGAATCAAAAACCATTGTGGTGATCGTGCCCGATATTTGTGACCCTTATTACACCGAGATCATTCGTGGT
ATCGAAGATGTGGCGATGGAGCATGGGTATTTGGTGCTGCTGGGTGACAGTGGTCAACAAAAGAAGCGTGAAAGCTCGTT
TGTGAACTTAGTCTTCACCAAGCAAGCCGACGGTATGTTATTGCTTGGTGCTGATCTGCCGTTTGATGTCAGTAAAGCGG
AACAAAAAAATCTGCCACCGATGGTGATGGCCTGTGAATATGCTCCAGAGTTAGAACTGCCGACGGTACATATTGATAAC
CTTACCTCAGCATTTGAGGCGGTGAACTACCTCACTCAGATGGGACATAAAAAAATTGCTCAAATCAGCGGGCCAGTAGG
TGCTGTGTTGTGTGAATTTCGTCAGCAAGGTTACCAGCAAGCACTGCGTAGAGCTGGATTGGTGAAAAACCCAACCTATA
CCGTTGTTGGTGACTTCTCTTTTGAATCCGGTGCTAAAGCGGTACGACAGTTATTAGCACTATCTGAGCCACCAAGTGCG
ATTTTTTGTCATAATGACGCGATGGCGATTGGGGCAATGCAAGAGGCGAAACGATTAGGTTTACGAGTTCCGCAAGATTT
ATCCGTTGTGGGGTTTGATGATATTCAGTTTGCTCAGTATTGCGATCCACCGTTAACGACGATTTGCCAGCCACGCTATG
AAATTGGCCGACAAACGATGTTGATGATGCTTGAATTACTGCGAGGTCGAGATGTTCAGGCCGGATCACGGTTATTAGAA
ACTCATCTGGTAGTGAGATCCAGCGCCGCGCCGCCAAGGTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

88.855

99.7

0.886
  cytR Vibrio parahaemolyticus RIMD 2210633

87.387

100

0.874

Multiple sequence alignment