Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   GPX86_RS05720 Genome accession   NZ_CP046793
Coordinates   1301420..1302397 (-) Length   325 a.a.
NCBI ID   WP_158144275.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 9502-00     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1296420..1307397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX86_RS05705 cysP 1296461..1297462 (-) 1002 WP_154169161.1 thiosulfate ABC transporter substrate-binding protein CysP -
  GPX86_RS05710 cysM 1297723..1298613 (+) 891 WP_158144273.1 cysteine synthase CysM -
  GPX86_RS05715 mutS 1298775..1301357 (+) 2583 WP_158144274.1 DNA mismatch repair protein MutS -
  GPX86_RS05720 rpoS 1301420..1302397 (-) 978 WP_158144275.1 RNA polymerase sigma factor RpoS Regulator
  GPX86_RS05725 nlpD 1302470..1303438 (-) 969 WP_158144276.1 murein hydrolase activator NlpD -
  GPX86_RS05730 - 1303438..1304064 (-) 627 WP_004395999.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  GPX86_RS05735 surE 1304068..1304823 (-) 756 WP_154169165.1 5'/3'-nucleotidase SurE -
  GPX86_RS05740 truD 1304816..1305862 (-) 1047 WP_158144277.1 tRNA pseudouridine(13) synthase TruD -
  GPX86_RS05745 ispF 1306024..1306500 (-) 477 WP_004396002.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GPX86_RS05750 ispD 1306497..1307147 (-) 651 WP_233268205.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 37252.07 Da        Isoelectric Point: 4.5868

>NTDB_id=407863 GPX86_RS05720 WP_158144275.1 1301420..1302397(-) (rpoS) [Vibrio metschnikovii strain 9502-00]
MSISNSVTKVEDFDFDPEVINAAESDVEQLSATNLKEEYDASSKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDEA
ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPI
HVVKELNIYLRTARELSQRLDHEPTAEEIAAELDKPVEDVNKMLRLNERISSVDTPIGGDGDKALLDILPDSNHSDPEVS
TQDDDIRLSLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLNMEALFN
VDNDN

Nucleotide


Download         Length: 978 bp        

>NTDB_id=407863 GPX86_RS05720 WP_158144275.1 1301420..1302397(-) (rpoS) [Vibrio metschnikovii strain 9502-00]
ATGAGTATCAGCAATTCAGTCACTAAAGTCGAAGATTTTGATTTTGACCCTGAAGTTATCAACGCAGCGGAGTCTGACGT
TGAGCAACTATCCGCCACTAACCTCAAAGAAGAATACGATGCATCGAGCAAAAGCTTAGATGCAACACAGATGTATTTGA
GTGAAATTGGTTTTTCACCCCTTTTAACCGCCGAAGAAGAAGTCCTTTACGCTCGACGTGCATTACGTGGTGATGAGGCC
GCGCGCAAGCGAATGATTGAAAGTAACCTACGCTTGGTGGTGAAAATCTCTCGCCGTTACAGTAACCGTGGTCTAGCGTT
GCTCGATTTGATTGAAGAAGGCAACCTAGGCTTGATCCGAGCCGTTGAAAAATTTGATCCAGAACGAGGTTTTCGTTTTT
CGACTTATGCCACGTGGTGGATTCGTCAAACCATCGAACGGGCGCTGATGAATCAAACTCGTACCATTCGTCTACCGATT
CATGTCGTCAAAGAGCTCAATATTTATTTGCGCACAGCACGTGAACTTTCACAGCGTTTGGACCATGAACCTACGGCAGA
GGAAATTGCCGCTGAGCTGGACAAGCCAGTTGAAGATGTCAATAAAATGCTACGTTTGAATGAGCGGATCAGTTCTGTTG
ATACTCCGATTGGTGGCGATGGCGATAAAGCATTGTTGGATATTCTGCCAGACTCTAATCACTCTGATCCGGAAGTGTCG
ACTCAAGATGATGATATTCGTTTATCTTTGCTTAATTGGCTTGATGAGCTCAATCCAAAGCAAAAAGAAGTCTTAGCGCG
CCGTTTTGGATTACTGGGTTATGAACCTTCAACGCTGGAAGAAGTTGGGCGAGAAATTAATCTTACCCGTGAGCGAGTCA
GACAGATCCAAGTAGAAGGCTTACGCCGCCTACGCGAGATCCTCGTTAAACAAGGGCTGAATATGGAAGCTTTGTTTAAT
GTCGATAACGACAATTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(165-238)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(47-80)

Sigma-70, region 4 (Sigma70_r4)

(253-306)

Sigma-70 region 2 (Sigma70_r2)

(85-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

87.164

100

0.898

Multiple sequence alignment