Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPX86_RS05580 Genome accession   NZ_CP046793
Coordinates   1274975..1275493 (-) Length   172 a.a.
NCBI ID   WP_154169135.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 9502-00     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1269975..1280493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX86_RS05560 rpsP 1270439..1270687 (-) 249 WP_004395977.1 30S ribosomal protein S16 -
  GPX86_RS05565 ffh 1270924..1272294 (-) 1371 WP_004395978.1 signal recognition particle protein -
  GPX86_RS05570 - 1272507..1273301 (+) 795 WP_154169131.1 inner membrane protein YpjD -
  GPX86_RS05575 - 1273608..1274882 (+) 1275 WP_154169133.1 CNNM domain-containing protein -
  GPX86_RS05580 luxS 1274975..1275493 (-) 519 WP_154169135.1 S-ribosylhomocysteine lyase Regulator
  GPX86_RS05585 gshA 1275610..1277178 (-) 1569 WP_158144265.1 glutamate--cysteine ligase -
  GPX86_RS05590 - 1277449..1280301 (-) 2853 WP_158144266.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19012.81 Da        Isoelectric Point: 5.1825

>NTDB_id=407860 GPX86_RS05580 WP_154169135.1 1274975..1275493(-) (luxS) [Vibrio metschnikovii strain 9502-00]
MPLLDSFTVDHTRMQAPAVRVAKTMQTPKGDTITVFDLRFTLPNQAILSEKGIHTLEHLYAGFMRNHLNSEQVEIIDISP
MGCRTGFYMSLIGAPTEQQVATAWLAAMEDVLKVRDQKDIPELNEYQCGTAAMHSLSEAQAIAQQVLSSGIGVNKNDQLA
LPESMLKNLQVN

Nucleotide


Download         Length: 519 bp        

>NTDB_id=407860 GPX86_RS05580 WP_154169135.1 1274975..1275493(-) (luxS) [Vibrio metschnikovii strain 9502-00]
ATGCCACTACTAGATAGCTTTACGGTTGATCATACTCGCATGCAAGCTCCCGCTGTACGGGTAGCGAAAACCATGCAAAC
CCCGAAAGGCGATACGATTACTGTATTTGACCTGCGTTTTACTCTGCCTAATCAAGCTATTTTGTCTGAAAAAGGAATTC
ATACTCTAGAGCACCTTTATGCGGGGTTCATGCGTAATCATCTTAATAGCGAACAGGTGGAAATTATTGATATTTCCCCA
ATGGGCTGTCGTACTGGATTTTATATGAGTTTGATTGGTGCACCTACCGAGCAGCAAGTGGCTACGGCGTGGTTAGCCGC
GATGGAAGATGTCTTGAAAGTGCGGGACCAAAAGGATATTCCAGAACTCAATGAGTACCAGTGCGGTACCGCAGCGATGC
ACTCTTTATCGGAAGCACAAGCGATCGCTCAGCAAGTATTAAGTAGCGGTATTGGGGTGAACAAAAATGATCAACTTGCT
TTACCTGAATCGATGCTAAAAAACCTACAAGTGAATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

84.302

100

0.843

Multiple sequence alignment