Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   GPY30_RS21040 Genome accession   NZ_CP046792
Coordinates   1120125..1122170 (-) Length   681 a.a.
NCBI ID   WP_158136392.1    Uniprot ID   -
Organism   Vibrio navarrensis strain 2462-79     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1115125..1127170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY30_RS21025 - 1116401..1117357 (-) 957 WP_039436776.1 AEC family transporter -
  GPY30_RS21030 ylqF 1117692..1118636 (+) 945 WP_039444790.1 ribosome biogenesis GTPase YlqF -
  GPY30_RS21035 cqsA 1118909..1120086 (+) 1178 Protein_980 alpha-hydroxyketone-type quorum-sensing autoinducer synthase -
  GPY30_RS21040 cqsS 1120125..1122170 (-) 2046 WP_158136392.1 hybrid sensor histidine kinase/response regulator Regulator
  GPY30_RS21045 - 1122432..1122979 (-) 548 Protein_982 N-acetyltransferase -
  GPY30_RS21050 - 1123146..1124270 (+) 1125 WP_252973624.1 fatty acid desaturase -
  GPY30_RS21055 - 1124331..1125308 (-) 978 WP_039429056.1 chemotaxis protein -
  GPY30_RS21060 - 1126149..1127159 (-) 1011 WP_158136397.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 78369.83 Da        Isoelectric Point: 6.6335

>NTDB_id=407847 GPY30_RS21040 WP_158136392.1 1120125..1122170(-) (cqsS) [Vibrio navarrensis strain 2462-79]
MESIRKVYQYANPNLTLVGWMGFLGFPTYYWVWTHLFPQSYENLPLRLLCSALFLLLVLRERLPMPIRTRMPIVYLIVIT
TCLPFFFFFMLLMNEWSNVWVMSFMAAIFLHILLVHMTKVMFSQTFIGVGMAVLAAYVCNDFHLVISVDWRHVPIFLFIY
LFGNLFYFRNQVEHESRISIAKAFGAGIAHEMRNPLSGLVASIDVIQSVLPNDKVEKRSSYALSAKDVALLREVSEEAMK
IIHSGNETIDLLLTSIDENRVSRSTFKRHSANEVVKNAIESFSYKKAADRQCIRYHEEGQFEFFGSHTLLKYVIYNLVKN
AFNYRNPDVFTIDITISRDETENMITVRDNGQGIAPASMEHIFKDFYTTGKSGNYGLGLPFCKKVMRSFGGTIACQSEQG
HWTEFTLTFPLVKSKVVGEIKYELMKLKSVFFISEQELLCKKMVESARSSGFALTIKTAEQACLMAEYEFEYDLIFLDLS
SVDLKNSQLDRLESLLHFTEARIVYLYQDAIVNRRNQSTLPVLWVETQSWLLNTAQIIDRLMFDANFDAYMPAPVRKSDD
GKRVIMVVDDNDSLRKFTSLLLEKQGFEVIQREDGQEAIQALDKHHVDLILMDIEMPILDGIEASIQIRQSNQKYSHVPI
IAHTGDSTPVTLERINQSGMSDYLVKPADKNKLLDKISHWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=407847 GPY30_RS21040 WP_158136392.1 1120125..1122170(-) (cqsS) [Vibrio navarrensis strain 2462-79]
ATGGAATCGATTCGCAAGGTTTATCAATACGCTAACCCTAACTTGACGCTTGTCGGCTGGATGGGGTTTCTCGGCTTTCC
GACCTACTACTGGGTTTGGACGCATCTTTTTCCTCAGTCTTACGAGAATCTTCCGCTCAGGCTACTTTGTTCAGCTTTAT
TCTTGCTGCTGGTTTTGCGAGAGCGGTTACCCATGCCGATCCGCACGCGTATGCCCATCGTCTATTTGATAGTGATAACG
ACCTGTTTGCCTTTTTTCTTCTTTTTTATGCTGTTGATGAATGAATGGTCGAACGTTTGGGTCATGTCTTTTATGGCGGC
GATTTTCTTACACATCCTGTTAGTCCATATGACTAAGGTGATGTTTAGTCAAACATTTATCGGCGTTGGCATGGCGGTGC
TTGCGGCGTATGTGTGCAATGACTTCCATCTGGTGATTTCCGTCGACTGGCGTCATGTGCCGATATTTCTCTTTATCTAT
CTGTTTGGCAACTTATTCTATTTTCGCAATCAAGTTGAACATGAATCACGGATCTCGATCGCCAAAGCGTTTGGTGCAGG
AATCGCCCATGAAATGCGTAATCCGTTGAGCGGCTTGGTTGCTTCTATCGATGTGATCCAATCAGTGCTTCCCAACGATA
AAGTTGAGAAACGCAGCAGCTACGCGTTAAGTGCCAAAGACGTCGCTTTACTACGAGAAGTAAGTGAAGAAGCAATGAAG
ATTATCCATTCGGGCAATGAGACGATTGATCTGCTTTTGACTTCGATTGATGAAAATCGTGTATCTCGCTCAACCTTTAA
GCGGCATTCGGCCAATGAGGTAGTAAAAAATGCCATTGAGAGCTTTAGTTATAAAAAAGCCGCAGACAGGCAGTGCATTC
GTTACCACGAGGAAGGGCAGTTTGAATTTTTTGGCAGCCACACGTTACTGAAGTACGTCATTTATAACCTTGTTAAAAAT
GCGTTTAACTATCGCAATCCCGATGTGTTCACCATTGATATTACGATAAGTCGCGATGAAACAGAGAACATGATTACCGT
GCGAGACAACGGGCAGGGAATTGCGCCAGCCTCGATGGAACATATTTTCAAGGACTTCTATACCACAGGAAAAAGCGGTA
ACTATGGTTTAGGATTGCCATTTTGTAAAAAGGTGATGCGATCATTTGGTGGCACTATCGCTTGTCAATCGGAGCAAGGG
CACTGGACGGAGTTTACGCTGACGTTTCCGTTGGTGAAATCTAAAGTAGTTGGTGAAATAAAATATGAGCTGATGAAACT
CAAGTCGGTCTTTTTTATCAGTGAGCAAGAGCTCTTGTGTAAAAAAATGGTGGAATCAGCCCGCTCAAGTGGTTTCGCTC
TCACGATAAAAACGGCCGAGCAAGCGTGCTTAATGGCCGAATATGAATTTGAATATGATCTTATTTTTCTTGATTTGAGT
TCGGTCGACTTAAAAAACAGCCAGTTAGATAGGCTAGAATCTTTATTACATTTTACCGAAGCACGCATTGTTTACTTGTA
TCAGGATGCGATAGTCAATCGCCGCAACCAAAGTACATTACCGGTATTGTGGGTGGAAACGCAGTCTTGGTTACTCAATA
CGGCACAGATTATCGACAGACTCATGTTTGACGCGAACTTTGATGCTTACATGCCCGCTCCGGTCAGAAAATCCGACGAT
GGCAAGCGGGTGATTATGGTGGTTGACGATAATGATTCGCTGCGCAAGTTCACCTCCTTGCTATTGGAGAAACAGGGTTT
TGAAGTGATTCAAAGAGAAGATGGTCAGGAAGCGATTCAGGCATTAGATAAACATCATGTTGATCTCATTTTGATGGATA
TTGAAATGCCGATATTAGATGGTATAGAAGCGTCAATTCAGATCCGTCAGTCAAATCAAAAATATTCCCATGTCCCAATT
ATTGCTCATACTGGTGACAGCACTCCTGTGACACTGGAGAGAATTAATCAGTCAGGTATGTCTGATTATTTAGTTAAACC
CGCCGATAAAAATAAGTTACTAGACAAAATATCGCACTGGATATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-411)

Response regulator receiver domain (Response_reg)

(565-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

49.123

100

0.493

Multiple sequence alignment