Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GPY30_RS18300 Genome accession   NZ_CP046792
Coordinates   487364..488461 (+) Length   365 a.a.
NCBI ID   WP_039427130.1    Uniprot ID   A0A099LVY0
Organism   Vibrio navarrensis strain 2462-79     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 482364..493461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY30_RS18270 - 482551..483891 (-) 1341 WP_158135724.1 MATE family efflux transporter -
  GPY30_RS18275 - 484060..484377 (-) 318 WP_039427122.1 DUF496 family protein -
  GPY30_RS18280 - 484650..484853 (+) 204 WP_039427123.1 hypothetical protein -
  GPY30_RS18285 - 484953..485612 (+) 660 WP_158135726.1 YceH family protein -
  GPY30_RS18290 - 485612..485908 (+) 297 WP_158135728.1 GIY-YIG nuclease family protein -
  GPY30_RS18295 - 485981..487141 (+) 1161 WP_158135730.1 conjugal transfer protein TraF -
  GPY30_RS18300 luxP 487364..488461 (+) 1098 WP_039427130.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  GPY30_RS18305 luxQ 488465..491032 (+) 2568 WP_158135732.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  GPY30_RS18310 - 491067..491729 (-) 663 WP_039436477.1 flagellar brake protein -
  GPY30_RS18315 - 491869..492807 (-) 939 WP_158135734.1 DMT family transporter -
  GPY30_RS18320 - 492947..493402 (+) 456 WP_039427136.1 Lrp/AsnC family transcriptional regulator -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41439.99 Da        Isoelectric Point: 5.7255

>NTDB_id=407845 GPY30_RS18300 WP_039427130.1 487364..488461(+) (luxP) [Vibrio navarrensis strain 2462-79]
MKKALMMSLLCLANFSANAQTSEVLNGYWAYQEYLERFPEQADLTNALAQTVRNHPVPLKAYQAKPVRISVVFPGQQVSD
YWVRNLSAFEKRMDKLQISYQINQVFTRPNADIKQQSVSLMEALKSKSDYLIFTLDTTRHRKFIEHVLDSSDTKLILQNI
TTPVQAWEKRQPFLYVGFDHAQGSIALAKQLEKMYPQGGQYSVLYFSEGYVSDARGDTFIRELNRDNHFQLRSSFYTKAT
KESGYETAMMSLEKYPDVNFIYACSTDVALGALDALKELKRDDIVLNGWGGGSAELDAISAGDLDLTVMRMNDDTGIAMA
EAIKWDLEGKKVPTVFSGDFEVVTKEDSPQHIETLKERAFRYSGQ

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=407845 GPY30_RS18300 WP_039427130.1 487364..488461(+) (luxP) [Vibrio navarrensis strain 2462-79]
ATGAAAAAAGCATTAATGATGTCTTTGCTTTGTTTAGCAAATTTTAGTGCCAATGCACAAACTTCAGAAGTCTTGAACGG
ATACTGGGCGTATCAAGAATATTTAGAGCGCTTTCCAGAACAAGCCGATTTAACCAATGCGCTTGCGCAAACTGTACGTA
ACCATCCTGTGCCGCTCAAAGCGTATCAGGCAAAGCCTGTGCGTATTTCGGTGGTGTTTCCTGGCCAACAAGTTTCTGAT
TACTGGGTTAGGAATCTGAGTGCGTTTGAGAAACGCATGGATAAGCTGCAGATAAGCTATCAGATCAATCAAGTGTTCAC
CCGTCCAAATGCCGATATTAAGCAGCAAAGCGTATCACTGATGGAAGCGCTAAAAAGTAAGTCGGATTATCTGATTTTTA
CCCTAGACACCACCCGTCACCGCAAATTTATTGAGCATGTTCTTGACTCCTCGGACACTAAGCTGATCTTGCAAAACATC
ACCACACCAGTACAGGCATGGGAAAAACGTCAACCATTTTTATATGTCGGCTTCGATCATGCGCAAGGCAGCATTGCGTT
GGCTAAGCAATTGGAAAAAATGTATCCGCAAGGTGGTCAGTACTCCGTGCTCTATTTCTCTGAAGGTTATGTTAGTGATG
CCAGAGGCGATACATTTATTCGTGAGCTAAACAGAGACAACCATTTTCAATTGCGCTCGTCGTTCTACACCAAAGCGACC
AAAGAATCTGGCTATGAAACCGCTATGATGAGCTTAGAAAAGTATCCAGATGTCAACTTCATCTATGCCTGCTCGACCGA
TGTCGCCTTAGGCGCGCTTGATGCGTTAAAAGAGCTCAAACGAGACGACATTGTGCTCAACGGCTGGGGCGGTGGATCGG
CTGAGTTGGACGCTATCAGCGCTGGCGATCTCGACCTCACTGTCATGCGAATGAATGATGATACGGGTATTGCGATGGCA
GAAGCGATTAAGTGGGATTTGGAAGGGAAGAAAGTCCCGACCGTATTTTCAGGAGATTTTGAAGTGGTGACCAAAGAAGA
TAGCCCGCAACACATTGAAACTCTTAAAGAGAGAGCCTTCAGATATTCTGGCCAATAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(70-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A099LVY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.738

99.452

0.644

Multiple sequence alignment