Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY30_RS13780 Genome accession   NZ_CP046791
Coordinates   2807287..2807805 (-) Length   172 a.a.
NCBI ID   WP_039430460.1    Uniprot ID   A0A0F2HW57
Organism   Vibrio navarrensis strain 2462-79     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2802287..2812805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY30_RS13755 rimM 2802349..2802897 (-) 549 WP_045571212.1 ribosome maturation factor RimM -
  GPY30_RS13760 rpsP 2802912..2803160 (-) 249 WP_011079541.1 30S ribosomal protein S16 -
  GPY30_RS13765 ffh 2803417..2804796 (-) 1380 WP_039430457.1 signal recognition particle protein -
  GPY30_RS13770 - 2805009..2805803 (+) 795 WP_039430458.1 inner membrane protein YpjD -
  GPY30_RS13775 - 2805913..2807190 (+) 1278 WP_039437916.1 CNNM domain-containing protein -
  GPY30_RS13780 luxS 2807287..2807805 (-) 519 WP_039430460.1 S-ribosylhomocysteine lyase Regulator
  GPY30_RS13785 - 2807869..2808429 (-) 561 WP_252973596.1 hypothetical protein -
  GPY30_RS13790 gshA 2808482..2810047 (-) 1566 WP_158134414.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18932.71 Da        Isoelectric Point: 4.8362

>NTDB_id=407834 GPY30_RS13780 WP_039430460.1 2807287..2807805(-) (luxS) [Vibrio navarrensis strain 2462-79]
MPLLDSFTVDHTRMQAPAVRVAKTMQTPKGDTITVFDLRFTVPNQDILSEKGIHTLEHLYAGFMRKHLNGESVEIIDISP
MGCRTGFYMSLIGAPTEQSVAAAWQASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAKQIASNILAAGISVNKNDDLA
LPAEMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=407834 GPY30_RS13780 WP_039430460.1 2807287..2807805(-) (luxS) [Vibrio navarrensis strain 2462-79]
ATGCCGTTATTAGATAGTTTTACCGTCGATCACACGAGAATGCAGGCACCGGCCGTGCGTGTTGCCAAAACCATGCAAAC
GCCAAAAGGCGACACCATTACCGTGTTTGACTTGCGTTTTACTGTGCCAAACCAAGACATTTTATCGGAAAAAGGGATCC
ACACCTTAGAGCATTTGTATGCAGGCTTTATGCGCAAGCACCTCAATGGAGAGAGTGTAGAGATCATTGACATTTCGCCA
ATGGGATGTCGCACCGGTTTTTACATGAGCCTGATTGGTGCGCCGACAGAGCAAAGCGTTGCTGCTGCGTGGCAAGCATC
GATGGAAGATGTGCTGAAAGTGGAAAGCCAGAACAAGATCCCAGAGCTGAACGAGTACCAATGTGGTACGGCGGCGATGC
ACTCGCTGGAAGAGGCAAAACAGATCGCCAGCAACATTCTCGCCGCGGGTATCTCAGTCAATAAAAACGACGACTTAGCA
TTGCCAGCAGAGATGCTCAAAGAGTTGAAAGTCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2HW57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment