Detailed information NTG0407829

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: GPY30_RS13445
• Genome accession: NZ_CP046791
• Coordinates: 2725886..2729275 (+)
• Length: 1129 a.a.
• NCBI ID: WP_158134354.1
• Uniprot ID: A0AAI9CST8
• Organism: Vibrio navarrensis strain 2462-79
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2720886..2734275

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY30_RS13425	erpA	2721293..2721634 (-)	342	WP_039430398.1	iron-sulfur cluster insertion protein ErpA	-
GPY30_RS13430	hemL	2721916..2723211 (+)	1296	WP_158134349.1	glutamate-1-semialdehyde 2,1-aminomutase	-
GPY30_RS13435	-	2723454..2724539 (+)	1086	WP_158134351.1	AI-2E family transporter	-
GPY30_RS13440	rsmC	2724611..2725633 (+)	1023	WP_158134353.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
GPY30_RS13445	chiS	2725886..2729275 (+)	3390	WP_158134354.1	response regulator	Regulator
GPY30_RS13450	-	2729952..2731625 (+)	1674	WP_039430402.1	ABC transporter substrate-binding protein	-
GPY30_RS13455	-	2731793..2732779 (+)	987	WP_061895225.1	ABC transporter permease	-
GPY30_RS13460	-	2732782..2733807 (+)	1026	WP_039435873.1	ABC transporter permease	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127206.55 Da
• Isoelectric Point: 6.3248

>NTDB_id=407829 GPY30_RS13445 WP_158134354.1 2725886..2729275(+) (chiS) [Vibrio navarrensis strain 2462-79]
MFKFYRKQKFKRLQSTLMTAFLVLSLTPLTIIAIFFLQSHSKDLQEQSTSHLLSVRDTKQQQVMDYFQAQETEVMGFVRS
ELAYASGGRFYGLVNAFKSLGLDIEQARENAQQRYIPGSGDQIKTSILPESSSYVGSERYRLLHKRYHWAYLELLKRSDF
DDILLIDLDGNVTYSIYKYDNFGTNLKTGPYKDTLLGRSFRQLAKDVTEKRKDNEDYTPVLISDFAEEDGKQVAWLGAPI
IQQGYLHSYAMFRLPNNGLTKLVADVNKDAVIHTLLVGSDHLPRTMSTKQDDISQSAEVINKALAGLTSVGTYINGLGEA
TIAAFTPITLKGQTWALVVQLPESEAFARIQQLEKLFVIAMLIAIILVFICSHYLSNFITSPLLKLTWAAERVSAGDLDE
NMINTDRRDEIGRLAVSFERMQRSIRDKIQLIKTQNRELEKSLQLIQKQNDELQLADKLKDEFLATTSHELRTPLHGMIG
IAETLVSGANGPIPGNQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSLDIHKSAVSLASATRLVLELSSHLLGNKTLRI
INQVPNDLAPVSADPQRLEQVLYNLIGNAIKYTSEGKIVISANVVDGKARIQVVDTGQGIPAEQLEHIFEPLIQAGQDAG
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLASDEEINTTAKMAQYHHFQAPDSNELLSLDQSSLPENP
QGALLVVADDEPVNLRVLESFLRIEGYRVKTASDGPETLALIKQEKPALLLLDIMMPGMSGYQVCHQLRQEFDLAELPII
MLTALNQSEDRVRGFEAGANDYLSKPFNKQELAARIKAHLMASKAEERRLENSRLEAELKQRAMVEASLLETQGRLLEQL
ESAPEAIICIREDKRIRFANEAACKLFKRNLEQLKRSNAEELIAPKYLTVKQPHYCGHIDIYVEDVRQHIETDILKLPAE
SGLDAMFIFNVGGGATASRIHNLETAVEVLSSYAFDGDKEKLQSLKELGGEFTRLADKALGSNQNKQEIMREVLVDVMTH
ALDYWESVTGENKFAFAEKSGLWRVYLDRSTLQTRTLDKYMRIETLPRTPRWRTVLSSIEFILAHCKEQSPERSYIEMQR
DKLQRLLTS

Nucleotide

• Length: 3390 bp

>NTDB_id=407829 GPY30_RS13445 WP_158134354.1 2725886..2729275(+) (chiS) [Vibrio navarrensis strain 2462-79]
ATGTTTAAGTTTTACCGGAAACAGAAATTCAAACGTCTGCAAAGTACCCTGATGACGGCTTTTTTGGTGTTGAGTCTGAC
ACCATTAACCATCATTGCGATTTTCTTTTTGCAATCTCATAGCAAAGATCTGCAAGAGCAAAGCACTTCCCACCTCCTCT
CGGTGCGCGATACCAAGCAACAACAGGTGATGGATTATTTTCAGGCACAAGAAACCGAAGTGATGGGTTTTGTCCGTTCA
GAGTTAGCTTATGCCAGTGGTGGGCGTTTTTATGGCCTAGTCAACGCCTTTAAAAGCCTAGGTCTGGATATCGAGCAAGC
GCGCGAAAACGCCCAGCAACGCTATATTCCGGGCTCGGGCGATCAGATCAAAACGTCAATCTTGCCTGAATCCAGCAGCT
ATGTCGGTAGTGAACGTTACCGACTGCTGCACAAGCGCTATCACTGGGCCTACTTAGAACTACTCAAACGCTCCGATTTT
GACGACATCCTGCTCATCGATTTGGACGGCAACGTCACCTACTCCATCTATAAATACGATAATTTTGGTACCAACCTGAA
AACGGGGCCCTACAAAGACACTTTACTTGGAAGGAGCTTTCGCCAGCTTGCCAAAGACGTTACGGAAAAGCGCAAAGACA
ACGAAGATTACACCCCTGTGCTGATTTCCGATTTTGCCGAGGAAGATGGCAAACAGGTCGCTTGGTTAGGCGCCCCCATC
ATTCAACAAGGCTACTTGCACAGTTATGCGATGTTCCGTTTACCGAACAATGGCTTAACTAAACTGGTTGCCGATGTAAA
CAAAGATGCAGTGATCCATACCTTGCTCGTCGGTAGTGACCACTTACCGCGCACCATGAGTACCAAACAGGACGACATTA
GCCAAAGTGCAGAAGTGATCAACAAAGCATTGGCAGGCCTGACCTCGGTTGGAACCTACATAAATGGTTTAGGCGAAGCG
ACCATTGCCGCGTTTACACCGATTACCCTAAAAGGACAAACTTGGGCGCTCGTAGTCCAATTGCCTGAGAGCGAAGCCTT
TGCTCGCATCCAACAATTGGAGAAACTGTTTGTCATCGCCATGCTGATTGCCATCATTCTGGTATTTATCTGCTCACATT
ATCTGTCCAATTTCATTACCTCTCCGCTGCTTAAACTAACGTGGGCAGCAGAACGAGTCTCTGCTGGCGATCTTGACGAG
AATATGATCAATACAGATCGCCGGGATGAAATCGGCCGCTTGGCAGTTAGCTTTGAACGTATGCAGCGCTCCATTCGCGA
CAAAATTCAGTTAATCAAAACGCAAAACCGGGAGTTAGAAAAAAGTCTGCAATTGATCCAAAAGCAAAACGATGAGCTGC
AATTAGCCGATAAACTCAAAGATGAGTTCCTCGCGACCACCTCACACGAGTTGCGCACGCCATTGCATGGCATGATTGGC
ATTGCCGAAACCTTAGTCTCCGGAGCCAATGGTCCGATTCCAGGCAACCAAAAATATCAGCTCGATATCATCATCAAAAG
CGGCCAAAGGCTTGCAAACCTAGTCGACGACCTACTTGATTATCACAAAATGCGCTACGGCAGCTTGGACATTCATAAGT
CGGCGGTCAGTTTGGCCAGTGCCACCCGCTTAGTGCTTGAGCTTTCAAGCCATCTGCTCGGCAATAAAACACTACGAATC
ATCAATCAAGTTCCAAACGATCTCGCCCCCGTTTCCGCCGATCCACAGCGCTTGGAGCAAGTGTTGTACAACTTGATTGG
CAACGCGATTAAATACACCAGTGAAGGCAAAATCGTCATCTCCGCCAACGTAGTAGACGGCAAAGCAAGAATCCAAGTCG
TGGACACTGGACAGGGCATTCCAGCAGAACAGCTGGAGCATATTTTTGAACCGTTAATTCAAGCGGGTCAGGATGCAGGT
CGTTATCGGCAAGGGGCTGGCCTTGGCCTCTCGATTAGCCGTCAGTTAATTGAACTGATGGGCGGCTCTCTGTATGTCAG
CAGCCAGCCAATGGTGGGCACAACCTTTAGTTTTACTTTACCTTTGGCCAGTGATGAGGAGATCAATACTACAGCGAAGA
TGGCGCAATACCATCACTTCCAAGCGCCTGACAGCAATGAATTGCTCTCTCTCGACCAATCATCACTTCCAGAAAATCCG
CAGGGTGCATTATTAGTGGTGGCAGACGATGAGCCCGTGAATCTACGTGTACTGGAAAGTTTCCTGCGCATTGAAGGTTA
TCGTGTCAAAACCGCTTCCGATGGCCCGGAAACACTCGCATTGATCAAGCAAGAGAAACCGGCGTTGTTGCTACTCGATA
TCATGATGCCGGGCATGAGTGGTTACCAAGTTTGTCATCAGTTACGTCAAGAGTTCGATCTGGCGGAACTGCCCATCATC
ATGCTGACCGCACTCAATCAAAGTGAAGATCGCGTGCGCGGCTTTGAAGCGGGTGCCAACGATTACTTATCAAAACCGTT
TAATAAGCAAGAGCTTGCTGCTCGCATCAAGGCGCATCTGATGGCGAGCAAAGCTGAAGAGCGACGCTTGGAAAACAGCC
GCTTAGAAGCCGAGTTAAAACAGAGAGCGATGGTCGAGGCGAGTTTACTCGAGACGCAAGGACGACTACTGGAGCAACTG
GAATCGGCCCCTGAAGCCATCATCTGTATTCGGGAAGACAAGCGCATTCGTTTTGCCAACGAAGCCGCTTGTAAGCTGTT
TAAACGTAATTTAGAACAGCTCAAACGATCAAATGCAGAAGAGTTAATCGCACCTAAGTACCTAACCGTCAAACAGCCAC
ACTATTGCGGCCACATTGATATTTACGTCGAAGACGTAAGACAGCACATTGAAACCGACATTCTCAAATTGCCGGCAGAG
TCAGGCTTAGATGCCATGTTTATCTTTAACGTCGGTGGCGGCGCAACCGCGTCGCGCATTCACAACTTAGAAACCGCCGT
TGAGGTGCTCTCAAGCTATGCCTTTGATGGCGATAAAGAGAAACTGCAGAGCCTGAAAGAGCTCGGTGGCGAGTTTACGC
GATTAGCTGACAAAGCCTTGGGGAGCAACCAAAACAAGCAAGAGATAATGCGAGAGGTTTTGGTCGATGTGATGACCCAT
GCGTTAGACTACTGGGAGTCGGTCACAGGTGAGAACAAGTTTGCCTTTGCCGAGAAAAGCGGCTTGTGGCGCGTCTATCT
CGACCGAAGTACGCTGCAAACCCGCACTCTCGACAAATACATGCGCATTGAGACACTGCCAAGAACGCCTCGCTGGCGCA
CAGTACTTAGTTCTATTGAGTTTATTCTCGCGCATTGTAAAGAGCAGAGCCCAGAGCGTAGCTACATCGAAATGCAGCGC
GATAAGCTGCAACGTCTACTCACCAGCTAA

Domains

Predicted by InterproScan.

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• PAS fold (PAS) (877-926)

• HAMP domain (HAMP) (375-427)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• Response regulator receiver domain (Response_reg) (726-837)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.174	100	0.762