Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   GPY30_RS11555 Genome accession   NZ_CP046791
Coordinates   2299196..2300614 (-) Length   472 a.a.
NCBI ID   WP_039465517.1    Uniprot ID   A0AAI9G8B2
Organism   Vibrio navarrensis strain 2462-79     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2294196..2305614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY30_RS11520 moaE 2294841..2295302 (-) 462 WP_158133983.1 molybdopterin synthase catalytic subunit MoaE -
  GPY30_RS11525 moaD 2295305..2295550 (-) 246 WP_158133985.1 molybdopterin synthase sulfur carrier subunit -
  GPY30_RS11530 moaC 2295547..2296026 (-) 480 WP_158133987.1 cyclic pyranopterin monophosphate synthase MoaC -
  GPY30_RS11535 moaB 2296037..2296549 (-) 513 WP_158133989.1 molybdenum cofactor biosynthesis protein B -
  GPY30_RS11540 moaA 2296624..2297613 (-) 990 WP_039432578.1 GTP 3',8-cyclase MoaA -
  GPY30_RS11545 - 2297916..2298809 (+) 894 WP_158133991.1 YvcK family protein -
  GPY30_RS11550 luxU 2298865..2299212 (-) 348 WP_158133993.1 quorum-sensing phosphorelay protein LuxU -
  GPY30_RS11555 luxO 2299196..2300614 (-) 1419 WP_039465517.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  GPY30_RS11560 uvrB 2300877..2302906 (-) 2030 Protein_2085 excinuclease ABC subunit UvrB -
  GPY30_RS11570 vceB 2303622..2305157 (-) 1536 WP_039432582.1 multidrug efflux MFS transporter permease subunit VceB -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 52843.38 Da        Isoelectric Point: 6.1989

>NTDB_id=407828 GPY30_RS11555 WP_039465517.1 2299196..2300614(-) (luxO) [Vibrio navarrensis strain 2462-79]
MQHTTDAPRSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLKHRIPDLILLDLRLPDMTGMDVLHAVKASH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKNEADSPANQNYQGFIGSSQKMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSPQVIDRFNEYEWPGNVRQLQNVLRNIVVLNNGKEITLEMLPPPLNQPLARSE
NRLFKELEPVSVTDIYPLWMTEKMAIEQAIKACDGNIPRAAGYLDVSPSTIYRKLQTWNSKEEIRARDGITE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=407828 GPY30_RS11555 WP_039465517.1 2299196..2300614(-) (luxO) [Vibrio navarrensis strain 2462-79]
ATGCAACACACTACTGATGCGCCGCGCTCGCGTTACCTTCTCATGGTGGAAGATACTGCGTCTGTTGCGGCTTTATACCG
ATCCTATCTAACGCCATTGGGTATCGACATTAATATTGTCGGTACTGGACGCGATGCGATTGAAAGTCTCAAACACCGAA
TTCCGGATCTGATCCTGCTTGATTTAAGGTTACCTGATATGACCGGGATGGATGTACTGCACGCAGTGAAAGCCAGTCAT
CCCGATGTCCCGATTATCTTTATGACCGCGCACGGTTCGATAGATACTGCAGTCGAGGCGATGCGACATGGTTCACAAGA
CTTTTTGATTAAACCTTGTGAAGCAGATCGCTTGCGGGTCACGGTCAATAACGCCATTCGTAAAGCCAGCAAACTGAAAA
ATGAAGCCGACAGCCCGGCGAATCAGAACTACCAAGGTTTCATTGGTAGTAGCCAGAAAATGCAGCAGGTTTACCGCACC
ATAGATTCAGCGGCAAGCAGCAAAGCGAGTATTTTCATCACCGGAGAAAGTGGTACGGGGAAAGAAGTCTGTGCAGAGGC
CATTCACGCCGCGAGTCGTCGTGGCGACAAGCCTTTCATCGCGATCAACTGTGCGGCGATTCCCAAAGATTTGATTGAAA
GTGAGCTGTTTGGCCACGTAAAAGGTGCTTTTACCGGCGCAGCGACGGATCGGCAAGGGGCGGCAGAATTAGCCGATGGC
GGTACTTTGTTTCTTGATGAGCTGTGCGAAATGGATTTGGATTTGCAAACCAAGTTGTTGCGCTTTATCCAAACAGGCAC
GTTCCAGAAAGTCGGTTCGTCAAAAATGAAAAGTGTCGATGTGCGTTTTGTTTGTGCCACCAACCGCGATCCTTGGAAAG
AAGTGCAAGAAGGGCGTTTTCGTGAGGACTTGTACTACCGCTTGTATGTGATCCCACTGCATCTTCCTCCGCTGCGAGAG
CGGGGAGAGGATGTGATAGAAATCGCCTACTCTTTACTGGGTTACATGTCTCATGAAGAGGGCAAAAACTTTGTACGTTT
CTCACCTCAGGTGATTGACCGCTTTAATGAGTACGAATGGCCCGGAAACGTGCGACAGCTCCAAAACGTGCTGCGCAACA
TAGTAGTACTAAACAATGGTAAGGAAATTACCTTGGAGATGTTGCCACCGCCGTTAAACCAACCATTGGCTCGCAGTGAA
AATCGCCTATTCAAAGAGTTAGAGCCGGTTTCTGTAACAGATATCTACCCGTTATGGATGACAGAAAAAATGGCGATTGA
GCAGGCGATCAAAGCGTGTGATGGCAATATTCCACGTGCCGCAGGTTACTTGGACGTTAGTCCATCGACTATCTATCGCA
AACTCCAAACTTGGAACAGTAAAGAAGAGATCAGGGCCCGTGATGGAATTACTGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.313

95.975

0.828

Multiple sequence alignment