Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PSEFU_RS19880 Genome accession   NC_015556
Coordinates   4312126..4313493 (-) Length   455 a.a.
NCBI ID   WP_013793048.1    Uniprot ID   F6AIA0
Organism   Pseudomonas fulva 12-X     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4307126..4318493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSEFU_RS19860 (Psefu_3965) - 4307279..4307905 (+) 627 WP_013793043.1 response regulator -
  PSEFU_RS19865 (Psefu_3966) - 4307982..4308353 (+) 372 WP_013793044.1 PilZ domain-containing protein -
  PSEFU_RS19870 (Psefu_3967) - 4308486..4309673 (+) 1188 WP_013793045.1 DUF3142 domain-containing protein -
  PSEFU_RS19875 (Psefu_3968) - 4309660..4311828 (+) 2169 WP_013793046.1 hypothetical protein -
  PSEFU_RS23235 (Psefu_3969) - 4311845..4312018 (-) 174 WP_013793047.1 hypothetical protein -
  PSEFU_RS19880 (Psefu_3970) radA 4312126..4313493 (-) 1368 WP_013793048.1 DNA repair protein RadA Machinery gene
  PSEFU_RS19885 (Psefu_3971) - 4313632..4314117 (+) 486 WP_013793049.1 GNAT family N-acetyltransferase -
  PSEFU_RS19890 (Psefu_3972) - 4314255..4314491 (-) 237 WP_013793050.1 YdcH family protein -
  PSEFU_RS19895 (Psefu_3973) - 4314570..4314824 (-) 255 WP_013793051.1 DUF465 domain-containing protein -
  PSEFU_RS19900 (Psefu_3974) mscL 4315110..4315523 (+) 414 WP_013793052.1 large-conductance mechanosensitive channel protein MscL -
  PSEFU_RS19905 (Psefu_3975) - 4315587..4317152 (-) 1566 WP_013793053.1 TerC family protein -
  PSEFU_RS19910 (Psefu_3976) - 4317466..4318239 (-) 774 WP_013793054.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48696.21 Da        Isoelectric Point: 7.1316

>NTDB_id=40782 PSEFU_RS19880 WP_013793048.1 4312126..4313493(-) (radA) [Pseudomonas fulva 12-X]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLTETMIEAGGAAAPSGRTGWAGQQAQLKTLAEVSVEEVARFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNVAQRFPALYVTGEESQQQVAMRARRLGLPEDKLKVMTETCIESIIA
TARHEKPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRFAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GDPDGRLRLLRAVKNRFGAINELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSIVMATWEGTRPMLVEVQALVDTSHMA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALISAVISSLRNRPLPHDLLVFGEVGLSG
EIRPVPSGQERLKEAAKHGFKRAIVPKANAPKESPPGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=40782 PSEFU_RS19880 WP_013793048.1 4312126..4313493(-) (radA) [Pseudomonas fulva 12-X]
ATGGCCAAGGCTAAACGCTTGTACGGCTGCACCGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGGCAATGCGGCGAGTG
CGGCGCCTGGAATACCCTCACCGAAACCATGATTGAAGCTGGCGGCGCAGCGGCGCCCAGCGGGCGAACCGGCTGGGCCG
GGCAGCAGGCGCAGCTCAAGACCCTGGCCGAAGTCAGCGTCGAGGAAGTTGCGCGCTTTTCCACAGCATCCGGCGAACTC
GACCGCGTGCTTGGCGGTGGCCTGGTGGACGGCTCGGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCGACCAT
CCTGCTGCAGACCCTGTGCAACGTCGCCCAGCGTTTTCCGGCGCTGTACGTCACCGGTGAGGAATCCCAGCAGCAGGTGG
CGATGCGTGCCCGACGTCTTGGCCTGCCGGAAGACAAACTCAAGGTGATGACCGAGACCTGCATCGAAAGCATCATCGCC
ACCGCCCGCCACGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGCTGCAGTCCGCGCC
CGGTGGCGTGGCCCAGGTGCGCGAGAGTGCGGCGCTCCTGGTGCGTTTCGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGACACGTGACCAAGGAAGGCGCCCTGGCCGGCCCGCGGGTGCTCGAGCACATGGTTGACACCGTGCTGTATTTCGAG
GGCGACCCCGATGGCCGCCTGCGTTTGTTGCGTGCGGTGAAGAACCGCTTCGGCGCGATCAACGAGCTGGGCGTGTTCGG
CATGACCGACAAGGGCCTCAAGGAAGTCAGCAACCCCTCGGCGATCTTCCTCACCCGCGCCCAGGAAGAGGTGCCGGGCA
GCATCGTCATGGCCACCTGGGAAGGCACCCGGCCAATGCTGGTGGAAGTGCAGGCGCTGGTCGACACCAGCCATATGGCC
AACCCGCGCCGCGTCACCCTGGGTCTCGATCAGAACCGCCTGGCCATGCTGCTGGCCGTGTTGCACCGCCACGGCGGCAT
TCCCACCTATGACCAGGACGTGTTTCTCAACGTGGTCGGCGGTGTGAAGGTGCTGGAAACCGCCTCCGACCTGGCGCTGA
TCTCGGCAGTCATTTCCAGCCTGCGCAACCGGCCGCTGCCCCATGATCTTTTGGTCTTCGGCGAGGTTGGCCTTTCCGGC
GAAATTCGCCCGGTGCCCAGCGGTCAGGAGCGTTTGAAAGAAGCCGCCAAGCACGGTTTCAAGCGCGCCATTGTGCCCAA
GGCCAACGCGCCGAAGGAGTCGCCGCCCGGGCTGCAGGTGATCGCTGTGACGCGCCTGGAGCAAGCACTCGACGCGCTAT
TCGAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F6AIA0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.578

100

0.488
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468
  radA Streptococcus pneumoniae Rx1

46.711

100

0.468
  radA Streptococcus pneumoniae D39

46.711

100

0.468
  radA Streptococcus pneumoniae R6

46.711

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.711

100

0.468

Multiple sequence alignment