Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GPY30_RS01855 Genome accession   NZ_CP046791
Coordinates   407544..408551 (-) Length   335 a.a.
NCBI ID   WP_039462523.1    Uniprot ID   A0AAI9CWD3
Organism   Vibrio navarrensis strain 2462-79     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 402544..413551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY30_RS01835 - 402821..403738 (-) 918 WP_158133007.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  GPY30_RS01840 hslU 404263..405594 (-) 1332 WP_158133008.1 HslU--HslV peptidase ATPase subunit -
  GPY30_RS01845 hslV 405620..406174 (-) 555 WP_039422960.1 ATP-dependent protease subunit HslV -
  GPY30_RS01850 - 406596..407141 (-) 546 WP_039422963.1 SPOR domain-containing protein -
  GPY30_RS01855 cytR 407544..408551 (-) 1008 WP_039462523.1 DNA-binding transcriptional regulator CytR Regulator
  GPY30_RS01860 priA 408753..410954 (-) 2202 WP_158133009.1 primosomal protein N' -
  GPY30_RS01865 rpmE 411216..411437 (+) 222 WP_039422972.1 50S ribosomal protein L31 -
  GPY30_RS01870 - 411724..413001 (+) 1278 WP_045569774.1 malic enzyme-like NAD(P)-binding protein -
  GPY30_RS01875 metJ 413128..413445 (-) 318 WP_039422980.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36858.38 Da        Isoelectric Point: 5.4528

>NTDB_id=407813 GPY30_RS01855 WP_039462523.1 407544..408551(-) (cytR) [Vibrio navarrensis strain 2462-79]
MATMKDVAQLAGVSTATVSRALMNPEKVSATTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFTEIIRG
IEDAAMEQGYLVLLGDSGQQKRRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPSSAVLCQFRQQGYQQALRRAGITMNPDYCAEAEFSFAGGTEAIRQLLELPEPPTA
VFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLEVLKGHEIHSGSRLLE
TQLVIRGSAAPPRVR

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=407813 GPY30_RS01855 WP_039462523.1 407544..408551(-) (cytR) [Vibrio navarrensis strain 2462-79]
ATGGCGACAATGAAGGATGTTGCCCAGCTCGCTGGTGTCTCGACCGCCACGGTCTCAAGAGCACTAATGAATCCCGAAAA
AGTGTCGGCCACCACCAGAAAACGGGTGGAAGACGCGGTTTTAGAGGCTGGATATTCACCAAACTCGCTTGCAAGAAATT
TACGTCGGAATGAATCAAAAACCATAGTAACGATTGTCCCAGACATCTGTGACCCTTACTTTACCGAGATTATTCGCGGT
ATCGAAGACGCAGCGATGGAGCAAGGCTACTTAGTTTTACTGGGTGACAGTGGTCAGCAAAAGCGGCGCGAAAGCTCGTT
TGTCAACCTTGTCTTCACCAAACAGGCCGATGGTATGTTGCTGCTTGGCACCGATCTACCGTTTGATGTCAGCAAGCCGG
AGCAGAAAAACCTACCACCGATGGTGATGGCGTGTGAGTTCGCCCCTGAGCTCGAACTACCCACCGTGCACATCGACAAC
CTAACCTCGGCGTTTGAAGCTGTGAACTACTTAACCCAGCTTGGGCATAAACGCATCGCGCAAATCTCCGGCCCATCGTC
TGCGGTGCTATGTCAGTTCCGTCAGCAAGGCTATCAACAAGCGCTACGACGCGCTGGCATCACCATGAACCCGGATTACT
GCGCGGAAGCCGAATTCTCGTTCGCCGGCGGTACAGAGGCCATTCGCCAGTTGTTAGAGTTACCTGAACCGCCGACAGCC
GTATTCTGCCACTGCGACACCATGGCGATTGGCGCGATTCAAGAAGCGAAAAAACTGGGCCTGCGCGTTCCGCAAGATCT
CTCCGTGGTCGGTTTTGATGATATTCAATTTGCCCAGTACTGCGATCCCCCTTTGACCACCATCTCTCAGCCGCGCTATG
AGATTGGCCGTCAGGCCATGCTGATGATGCTTGAAGTGCTCAAAGGGCATGAGATCCACAGTGGCTCTCGCCTGCTCGAA
ACGCAACTGGTGATCCGTGGCAGCGCCGCGCCACCAAGAGTGCGTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

91.291

99.403

0.907
  cytR Vibrio cholerae C6706

89.157

99.104

0.884

Multiple sequence alignment