Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GPY29_RS24585 Genome accession   NZ_CP046788
Coordinates   1638632..1639729 (-) Length   365 a.a.
NCBI ID   WP_029838311.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1174     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1633632..1644729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY29_RS24570 - 1634296..1635351 (-) 1056 WP_031782037.1 HlyD family secretion protein -
  GPY29_RS24575 - 1635389..1635844 (-) 456 WP_029838310.1 MarR family transcriptional regulator -
  GPY29_RS24580 luxQ 1636056..1638632 (-) 2577 WP_005477121.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  GPY29_RS24585 luxP 1638632..1639729 (-) 1098 WP_029838311.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  GPY29_RS24590 - 1640081..1640401 (-) 321 WP_005463466.1 GIY-YIG nuclease family protein -
  GPY29_RS24595 - 1640398..1641048 (-) 651 WP_029838312.1 YceH family protein -
  GPY29_RS24600 - 1641226..1641441 (-) 216 WP_005477197.1 hypothetical protein -
  GPY29_RS24610 - 1641769..1642083 (+) 315 WP_005453573.1 DUF496 family protein -
  GPY29_RS24615 - 1642206..1643543 (+) 1338 WP_025503450.1 MATE family efflux transporter -
  GPY29_RS24620 - 1643617..1644594 (-) 978 WP_015313433.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41383.68 Da        Isoelectric Point: 4.9670

>NTDB_id=407805 GPY29_RS24585 WP_029838311.1 1638632..1639729(-) (luxP) [Vibrio parahaemolyticus strain 2013V-1174]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIDPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=407805 GPY29_RS24585 WP_029838311.1 1638632..1639729(-) (luxP) [Vibrio parahaemolyticus strain 2013V-1174]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTCCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTGCCTATTGACCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCCGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGACCAAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTGAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACACGTTTTAGATTCCACCAAAACCAAACTTATCCTGCAAAATATC
ACGACGCCAGTCCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGCGAACT
CGCTGTGGAGTTTGGCAAGCAGTTCCCGAAAAATACCCATTACAGCGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCTGGGTATGAAGCTGCAAAAGCCAGTTTGAAAAAATACCCAGATGTCGAGTTCATTTATGCTTGTTCAACCGA
CGTTGCGTTAGGTGCCGTCGAAGCACTTTCTGAACTTGGCCGTGAAGACGTTATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCTATGGCA
GAGGCGATCAAATGGGATTTGGAAGGTAAACCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644

Multiple sequence alignment