Detailed information NTG0407790

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GPY29_RS15655
• Genome accession: NZ_CP046787
• Coordinates: 3132650..3133639 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain 2013V-1174
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3127650..3138639

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY29_RS15640	recA	3128198..3129241 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
GPY29_RS15645	pncC	3129442..3129924 (-)	483	WP_029839426.1	nicotinamide-nucleotide amidase	-
GPY29_RS15650	mutS	3130009..3132570 (+)	2562	WP_005478546.1	DNA mismatch repair protein MutS	-
GPY29_RS15655	rpoS	3132650..3133639 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
GPY29_RS15660	-	3133720..3134643 (-)	924	WP_029840169.1	peptidoglycan DD-metalloendopeptidase family protein	-
GPY29_RS15665	-	3134658..3135284 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GPY29_RS15670	surE	3135284..3136060 (-)	777	WP_025575295.1	5'/3'-nucleotidase SurE	-
GPY29_RS15675	truD	3136060..3137103 (-)	1044	WP_005478539.1	tRNA pseudouridine(13) synthase TruD	-
GPY29_RS15680	ispF	3137150..3137626 (-)	477	WP_005455572.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GPY29_RS15685	ispD	3137644..3138348 (-)	705	WP_005455574.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GPY29_RS15690	ftsB	3138350..3138631 (-)	282	WP_029840165.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=407790 GPY29_RS15655 WP_005478537.1 3132650..3133639(-) (rpoS) [Vibrio parahaemolyticus strain 2013V-1174]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=407790 GPY29_RS15655 WP_005478537.1 3132650..3133639(-) (rpoS) [Vibrio parahaemolyticus strain 2013V-1174]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCGCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851