Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY29_RS15520 Genome accession   NZ_CP046787
Coordinates   3110401..3110919 (-) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain 2013V-1174     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3105401..3115919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY29_RS15495 rimM 3105509..3106057 (-) 549 WP_029829788.1 ribosome maturation factor RimM -
  GPY29_RS15500 rpsP 3106086..3106334 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  GPY29_RS15505 ffh 3106544..3107926 (-) 1383 WP_005462555.1 signal recognition particle protein -
  GPY29_RS15510 - 3108139..3108933 (+) 795 WP_005462565.1 inner membrane protein YpjD -
  GPY29_RS15515 - 3109059..3110339 (+) 1281 WP_005462557.1 CNNM domain-containing protein -
  GPY29_RS15520 luxS 3110401..3110919 (-) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  GPY29_RS15525 - 3110986..3111591 (-) 606 WP_029838725.1 hypothetical protein -
  GPY29_RS15530 gshA 3111616..3113184 (-) 1569 WP_029800956.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=407787 GPY29_RS15520 WP_005462534.1 3110401..3110919(-) (luxS) [Vibrio parahaemolyticus strain 2013V-1174]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=407787 GPY29_RS15520 WP_005462534.1 3110401..3110919(-) (luxS) [Vibrio parahaemolyticus strain 2013V-1174]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTTGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTACCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment