Detailed information NTG0407768

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: GPY29_RS03170
• Genome accession: NZ_CP046787
• Coordinates: 613091..614137 (-)
• Length: 348 a.a.
• NCBI ID: WP_265548834.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 2013V-1174
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 608091..619137

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY29_RS03135	-	608269..608700 (-)	432	WP_031830037.1	DUF2787 family protein	-
GPY29_RS03140	radC	608697..609170 (-)	474	WP_005489555.1	DNA repair protein RadC	-
GPY29_RS03145	-	609320..609490 (+)	171	WP_255082103.1	AlpA family transcriptional regulator	-
GPY29_RS03150	-	609650..609874 (+)	225	WP_005489715.1	hypothetical protein	-
GPY29_RS03155	hslU	610299..611630 (-)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
GPY29_RS03160	hslV	611654..612205 (-)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
GPY29_RS03165	ftsN	612369..612914 (-)	546	WP_031830038.1	cell division protein FtsN	-
GPY29_RS03170	cytR	613091..614137 (-)	1047	WP_265548834.1	DNA-binding transcriptional regulator CytR	Regulator
GPY29_RS03175	priA	614431..616635 (-)	2205	WP_031830040.1	primosomal protein N'	-
GPY29_RS03185	rpmE	616930..617151 (+)	222	WP_005457203.1	50S ribosomal protein L31	-
GPY29_RS03190	rpsJ	617609..617920 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
GPY29_RS03195	rplC	617935..618564 (+)	630	WP_005456132.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38402.15 Da
• Isoelectric Point: 6.4948

>NTDB_id=407768 GPY29_RS03170 WP_265548834.1 613091..614137(-) (cytR) [Vibrio parahaemolyticus strain 2013V-1174]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSLLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=407768 GPY29_RS03170 WP_265548834.1 613091..614137(-) (cytR) [Vibrio parahaemolyticus strain 2013V-1174]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAGCT
TGGCCATAAACGCATAGCACAAATTTCAGGACCAGATACAGCGGTATTGTGTCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCTCCAACTGCGATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCA
AGAAGCGAAACGACTCGGTCTGCGTGTTCCACAAGATCTGTCGGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTCGAACTCCTT
AAAGGCCATGACGTTCATTCAGGTTCACTCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	99.713	100	0.997
cytR	Vibrio cholerae C6706	90.419	95.977	0.868